2464b7ec0a
Merge pull request #561 from sartography/main
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Main
2022-06-29 11:34:24 -04:00
d934b5a1da
Merge branch 'dev' into main
2022-06-29 11:29:31 -04:00
4ae1bad993
Merge pull request #558 from sartography/dependabot/pip/deploy/numpy-1.22.0
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Bump numpy from 1.21.0 to 1.22.0 in /deploy
2022-06-29 11:27:51 -04:00
8ea3f7df14
Merge pull request #560 from sartography/chore/upgrade_spiffworkflow
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Chore/upgrade spiffworkflow
2022-06-29 11:27:33 -04:00
da10eef7c6
updating the pipfile to use the new spiffworkflow.
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Fixing a slight bug in the lookup service tests, so they pass consistently.
2022-06-24 12:01:04 -04:00
b15750d2e4
Cleaned up the Workflow Processor's init method
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* removed all the performance metric code into a separate function.
* restructured the code so it is either creating a new workflow, or deserializing an old one.
* Added code to upgrade serialized objects from 1.0 to 1.1
* Using the new method of creating a bpmn_workflow object:
```python
parser = self.get_spec_parser(self.spec_files, spec_info)
top_level = parser.get_spec(spec_info.primary_process_id)
subprocesses = parser.get_process_specs()
self.bpmn_workflow = BpmnWorkflow(top_level, subprocesses, script_engine=self._script_engine)
```
Fixed a few minor bugs that stood out while testing
1. when updating a workflow, we should check for a valid task BEFORE calling cancel_notify, which requires a valid task.
2. get_localtime - quick fix on the date parser - for python 3.9.
3. the start_workflow script would error out in a way that made it unclear which workflow was having the problem. Fixed the error.
2022-06-24 11:34:39 -04:00
8d8db5f3ce
Merge branch 'dev'
2022-06-22 16:00:13 -04:00
5ff751058d
Merge pull request #559 from sartography/email-doc-code-fix-758
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Fix bug - Rename column `doc_codes` to `doc_code` #758
2022-06-22 15:47:58 -04:00
704917c7e3
Fix bug - Rename column `doc_codes` to `doc_code`
2022-06-22 15:33:22 -04:00
3f785dc597
Fix migration issue
2022-06-22 14:11:54 -04:00
a3fd617139
Bump numpy from 1.21.0 to 1.22.0 in /deploy
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Bumps [numpy](https://github.com/numpy/numpy ) from 1.21.0 to 1.22.0.
- [Release notes](https://github.com/numpy/numpy/releases )
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst )
- [Commits](https://github.com/numpy/numpy/compare/v1.21.0...v1.22.0 )
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updated-dependencies:
- dependency-name: numpy
dependency-type: direct:production
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Signed-off-by: dependabot[bot] <support@github.com>
2022-06-22 05:00:11 +00:00
9378a2ae1f
Merge pull request #557 from sartography/chore/return-to-pi-api-759
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Chore/return to pi api #759
2022-06-20 16:40:33 -04:00
56d3a61f54
Merge pull request #556 from sartography/chore/email-attachment-info-758
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Chore/email attachment info #758
2022-06-20 12:55:07 -04:00
d7c294e5f1
Merge pull request #555 from sartography/bug/move-workflow-spec-issue-744
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Bug/move workflow spec issue #744
2022-06-20 12:22:45 -04:00
77a56a9279
Test for new PB endpoint
2022-06-20 11:26:53 -04:00
700c551e84
Script to retrieve Pre Reviews for a study
2022-06-20 11:26:06 -04:00
7c9ccac8d2
Add new PB API endpoint for Pre Reviews.
2022-06-20 11:24:54 -04:00
fd0058355b
Add more examples in the description
2022-06-20 09:21:13 -04:00
0eee33f2a7
Make sure we send doc_codes with the get_email_data script
2022-06-15 17:07:02 -04:00
6b651c3da1
pass the doc_code along with the file data when appending attachments to email
2022-06-15 17:06:33 -04:00
f060c60b03
save doc_codes to the DB, when we send an email
2022-06-15 17:06:01 -04:00
6f393f712d
Store doc_code information for email message attachments
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- create table `email_doc_codes`
- create relationship with `email` table
- create schema for the new table
2022-06-15 15:15:40 -04:00
43e6a32841
Rewrite test_update_workflow_specification to make sure we update all metadata, and clean up old spec files and folders when changing category
2022-06-07 12:59:55 -04:00
4dcba38fdd
Add a method to FileSystemService that moves a workflow spec to a different category.
2022-06-07 12:55:48 -04:00
d3a89b6af4
Merge pull request #554 from sartography/chore/delete-file-changes-750
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Chore/delete file changes #750
2022-06-03 16:22:25 -04:00
baa0df6908
Test to make sure we only delete files for the current study
2022-06-03 16:09:34 -04:00
3924c33af4
Make sure we only delete files for the current study
2022-06-03 16:05:10 -04:00
d434602f55
Merge pull request #551 from sartography/chore/current-user-changes-755
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Chore/current user changes #755 and lane permissions #737
2022-06-03 15:45:49 -04:00
a485104957
Merge branch 'chore/current-user-changes-755' of github.com:sartography/cr-connect-workflow into chore/current-user-changes-755
2022-06-03 15:28:52 -04:00
0746848d8d
just a little quick cleanup
2022-06-03 15:28:04 -04:00
9729f18816
Cleaned up logic around whether we have a logged in user
2022-06-03 15:07:14 -04:00
963880ed9a
Better wording
2022-06-03 15:06:53 -04:00
3cc5013484
Merge pull request #550 from sartography/chore/unlock-admin-sandbox-739
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Chore/unlock admin sandbox #739
2022-06-03 14:14:56 -04:00
5a47e2bcd4
Merge pull request #547 from sartography/chore/email-script-parameter-746
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Chore/email script parameter #746
2022-06-03 13:40:44 -04:00
5addbd7286
Test and test workflow for the delete_file script changes
2022-06-03 13:35:20 -04:00
d39e4498e1
Merge pull request #552 from sartography/dependabot/pip/deploy/waitress-2.1.2
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Bump waitress from 2.1.1 to 2.1.2 in /deploy
2022-06-03 13:25:46 -04:00
e68a73b529
Merge pull request #553 from sartography/dependabot/pip/waitress-2.1.2
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Bump waitress from 2.1.1 to 2.1.2
2022-06-03 13:25:24 -04:00
7c130cb840
Change delete_file script so that it defaults to deleting all files with the doc code, for the entire study.
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Before this change, the script only deleted files for the current workflow.
You can now pass `study_wide=False` to only delete files for the current workflow
2022-06-03 13:24:32 -04:00
d5c5fe075d
We were running the config twice
2022-06-03 10:07:35 -04:00
686af32b22
Added test for lane permissions
2022-06-03 10:05:06 -04:00
3b94881212
Bump waitress from 2.1.1 to 2.1.2
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Bumps [waitress](https://github.com/Pylons/waitress ) from 2.1.1 to 2.1.2.
- [Release notes](https://github.com/Pylons/waitress/releases )
- [Changelog](https://github.com/Pylons/waitress/blob/v2.1.2/CHANGES.txt )
- [Commits](https://github.com/Pylons/waitress/compare/v2.1.1...v2.1.2 )
---
updated-dependencies:
- dependency-name: waitress
dependency-type: direct:production
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Signed-off-by: dependabot[bot] <support@github.com>
2022-06-02 20:51:22 +00:00
2798b945ba
Bump waitress from 2.1.1 to 2.1.2 in /deploy
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Bumps [waitress](https://github.com/Pylons/waitress ) from 2.1.1 to 2.1.2.
- [Release notes](https://github.com/Pylons/waitress/releases )
- [Changelog](https://github.com/Pylons/waitress/blob/v2.1.2/CHANGES.txt )
- [Commits](https://github.com/Pylons/waitress/compare/v2.1.1...v2.1.2 )
---
updated-dependencies:
- dependency-name: waitress
dependency-type: direct:production
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Signed-off-by: dependabot[bot] <support@github.com>
2022-06-02 20:51:02 +00:00
7ece754d03
*** WIP ***
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Tests for lane permissions
2022-06-02 16:49:21 -04:00
30d6c3ac36
Make sure we are in a lane
2022-06-02 15:56:45 -04:00
2ac2163db3
Ran into a situation where spiff_task was None
2022-06-02 14:26:15 -04:00
906e02f81a
Set the LOCKED state for StartEvent
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We use this in lanes
2022-06-02 14:25:28 -04:00
2063ee42d8
Allow impersonations when checking user_is_admin
2022-06-02 14:24:05 -04:00
fd633f6b52
master_workflow_results should be a dictionary
2022-06-01 13:36:56 -04:00
e729c1e3d2
Raise an error if we don't have a logged in user
2022-06-01 13:36:20 -04:00
2039631bd0
*** WIP ***
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New script get_current_user
Replaces the current_user value that was removed from task data
Will also include information about the impersonating admin account if current_user is really an impersonation (view as)
2022-05-31 16:56:39 -04:00
Dan Funk
mike cullerton
dependabot[bot]