540 Commits

Author SHA1 Message Date
Carlos Lopez
419d06c95b Updating file by latest version 2020-07-17 12:31:05 -06:00
Carlos Lopez
a10ef9066d Github integration with admin 2020-07-17 12:31:05 -06:00
Aaron Louie
e82532aad8 Updates IND workflow spec. Fixes validation process to return lookups for enum values. 2020-07-17 11:51:21 -04:00
Aaron Louie
d67105332f Merge branch 'dev' into feature/lanes_and_roles 2020-07-16 14:00:53 -04:00
Dan Funk
6c6c5d315d Fixing a stupid mistake where I used an unquoted value in the mock data for validation, which created a dict that could not be serilized. 2020-07-16 13:28:00 -04:00
Aaron Louie
6a24bcbf6f Clears out Jinja statements to get test to pass for now 2020-07-16 09:45:11 -04:00
Aaron Louie
d0279a11e5 Fixes failing unit test 2020-07-15 17:44:46 -04:00
Aaron Louie
3fe9662f26 Updates DSP workflow 2020-07-15 16:48:32 -04:00
Aaron Louie
77948c7828 Updates Personnel workflow 2020-07-15 14:28:55 -04:00
Aaron Louie
08fba1a4dc Merge branch 'dev' into feature/dynamic_enum_list 2020-07-15 13:09:02 -04:00
Dan Funk
c7662315aa Assure that any errors that occur during the do_engine_steps is correctly captured and returned to the end user or configurator with enough information for them to act on. 2020-07-15 11:16:35 -04:00
Dan Funk
fa7608053a fixing a failed test. 2020-07-14 22:23:54 -04:00
Dan Funk
d85ca1ce51 Whenever a workflow is loaded or updated, add events to the TaskEvent table with assignments for the next set of ready tasks, along with who should complete those tasks.
Add the lane information to the Task model.
Drop the foreign key constraint on the user_uid in the task log, as we might create tasks for users before they ever log into the system.
Add a new endpoint to the API called task events.  It should be possible to query this and get a list of all tasks that need a users attention.
The task events returned include detailed information about the workflow and study as sub-models
Rename all the actions in event log to things that are easier to pass over the api as arguments, make this backwards compatible, updating existing names in the database via the migration.
Throughly test the navigation and task details as control of the workflow is passed between two lanes.
2020-07-14 22:16:44 -04:00
Aaron Louie
c8214a4cc4 Updates DSP 2020-07-14 14:49:04 -04:00
Aaron Louie
d71ff80eac Adds end and start events 2020-07-14 13:42:52 -04:00
Dan Funk
9077ff3ebf It is not possible to use task_data for an auto-complete field. It's too expensive an operation to provide that feature on the backend, and the data already fully resides on the front end anyway. Task-data can be used to populate enum fields if needed, so it can populate dropdowns, radios and checkboxes, just not auto-complete. 2020-07-14 11:38:48 -04:00
Dan Funk
a48322ef6a Partial work on CR Connect Roles.
Adding checks in the API to assure the correct person is completeing a task based on the task's lane.
Adding lane to the Navigation item.
Adding a check to assure that unique user ids can be identified using task.data
Added some additional ldap entries to make testing and development easier.
Removed a big chunk of duplicate code from task_tests_api
Modified some of the helper functions to make it easier to test as specific users.
Added some additional bpmn models to the tests for testing lanes and roles.
2020-07-14 10:29:25 -04:00
Aaron Louie
463660f185 Merge branch 'dev' into feature/dynamic_enum_list 2020-07-13 17:47:56 -04:00
Aaron Louie
07066b8a16 Looks up enum options from task data 2020-07-13 17:46:28 -04:00
Dan Funk
069a9cac5e Merge branch 'feature/enum_lookup_data' of github.com:sartography/cr-connect-workflow into feature/enum_lookup_data 2020-07-13 12:46:13 -04:00
Dan Funk
9e29a43785 Correct for a race condition where multiple lookup tables are built for the same field and workflow specification, causing it to appear that the models are not updating correctly. 2020-07-13 12:45:51 -04:00
Aaron Louie
32343c04d6 Merge branch 'feature/enum_lookup_data' into feature/dynamic_enum_list 2020-07-13 11:53:29 -04:00
Aaron Louie
ccb2addeb5 Fixes another one 2020-07-10 16:27:09 -04:00
Aaron Louie
743e18746b Fixes some syntax issues 2020-07-10 16:17:49 -04:00
Aaron Louie
aea7b23aab Removes unnecessary test workflow spec 2020-07-10 14:52:08 -04:00
Aaron Louie
b7920989ed WIP: Adds Camunda property for retrieving enum field options from task data. 2020-07-10 14:48:38 -04:00
Aaron Louie
1f454536e3 Renames TOKEN_AUTH_SECRET_KEY to SECRET_KEY 2020-07-10 11:26:15 -04:00
Aaron Louie
7f0b35ff27 Merge branch 'dev' into feature/enum_lookup_data 2020-07-10 10:27:51 -04:00
Dan Funk
ff7c30b879
Merge pull request #138 from sartography/fix/cleanup_todos
Cleanup pending  TODOs
2020-07-10 08:26:47 -04:00
Dan Funk
6a79fb3581 There may be multiple investigators of the same type that come back from the protocol builder, adding some tests and additional code to handle this, but still keep the list flat, currently appends a number to the investigator type when there is more than one. 2020-07-07 17:16:33 -04:00
Carlos Lopez
64f9bd2ca7 Tiny leftover 2020-07-07 08:38:33 -06:00
Carlos Lopez
b4e127b3b7 Cleaning properly previous versions 2020-07-07 08:32:41 -06:00
Carlos Lopez
a302208890 Updating test for study with approvals 2020-07-07 08:32:41 -06:00
Carlos Lopez
c7b864f9c7 Cleaning up old notes 2020-07-07 08:32:20 -06:00
Aaron Louie
517cd8fc91 Merge branch 'dev' into feature/enum_lookup_data 2020-07-06 16:31:19 -04:00
Dan Funk
bb4000ff6d Don't attept to load up the workflows for abandoned studies. 2020-07-06 16:01:43 -04:00
Dan Funk
8a66128189 Bug fixes after bumping the version of Spiffworlflow to the latest - which has fixes for sequential multi-instance. 2020-07-06 15:34:24 -04:00
Dan Funk
419c05e46c
Merge branch 'dev' into fix/more-info-in-exceptions 2020-07-06 12:51:24 -04:00
Dan Funk
a5cef8775e * Modifying the StudyInfo script to return both "investigators" and "roles", the investigators argument will return only the current active investigators according to the protocol builder. The "roles" argument returns all possible roles - it is what "investigators" use to be.
* The Task.title returned to the front end will now attempt to process the "display_name" property for dot-notation syntax, making it possible to use this for multi-instance tasks,
  but will work in all cases where we want he title to change based on values in the data model.
* Fixing a bug the test_study_api where it wasn't updated when we made recent changes to the different states of a study.
*
2020-07-06 12:09:21 -04:00
Aaron Louie
1d9fef380a Merge branch 'fix/more-info-in-exceptions' into feature/enum_lookup_data 2020-07-03 14:22:11 -04:00
Aaron Louie
f344fe60c0 WIP: Adds enum field lookup option data 2020-07-03 12:20:10 -04:00
Carlos Lopez
817333f26e Adding proper exception information 2020-07-02 16:10:33 -06:00
Aaron Louie
340ae68eed Sets PB status to Active by default 2020-07-01 11:01:36 -04:00
Dan Funk
84973d2351 resolving comments from pull request. 2020-06-30 12:24:48 -04:00
Dan Funk
93bf46354b A last minute change to make the API a little clearer and cleaner broke some tests. 2020-06-30 11:12:28 -04:00
Dan Funk
f183e12fe5 Provides some basic tools for getting additional information about a lookup field.
Adds an optional 'value' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up if double spaces were used when performing a search.
2020-06-30 10:34:16 -04:00
Dan Funk
d3ce1af1ce Provides some basic tools for getting additional information about a lookup field.
Adds an optional 'id' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up in double spaces were used when performing a search.
2020-06-30 10:00:22 -04:00
Aaron Louie
e650a46073 Fixes local testing bug where working directory was sometimes wrong. 2020-06-29 16:41:42 -04:00
Aaron Louie
e03e3d9bd9 Merge branch 'dev' into fix/empty_task 2020-06-29 15:22:30 -04:00
Dan Funk
49e80398be Merge branch 'rrt/dev' into dev 2020-06-29 14:56:01 -04:00