1349 Commits

Author	SHA1	Message	Date
Dan	412290f2ab	The LDAP service didn't do a good enough check to see if the record was already in the database. This caused an error, which left the workflow in a waiting state. And that waiting state meant the error would just happen a million times over again until we pushed up this code change.	2021-12-09 06:33:30 -05:00
Dan	ffafc1674a	assure we don't overwrite task data with a previous form submission if that data already exists.	2021-12-07 17:04:20 -05:00
mike cullerton	8813098190	Updated to use new ProtocolBuilderCreatorStudy model and schema	2021-12-06 14:37:42 -05:00
mike cullerton	db1f3ba6ab	Model and schema for new StudyCreator api endpoint ... Update StudyModel to use new model	2021-12-06 14:36:34 -05:00
Dan	5cf011f1d9	Quick fix for ldap.	2021-12-02 12:19:36 -05:00
Dan	ad93b5fae6	We were not correctly handing the possibility of there only being a waiting task (and no ready tasks). ... We also had a problem with the validator throwing a 500 when it was trying tell us it would never finish validation.	2021-11-30 12:44:35 -05:00
Mike Cullerton	ec9d8f8a5c	Merge pull request #425 from sartography/bug/slow_ldap ... Remove wild-card from uid search, it performs very badly. Add a bit …	2021-11-30 11:09:42 -05:00
Mike Cullerton	8cc581611e	Merge pull request #426 from sartography/feature/performance_improvement ... Performance upgrades - study dashboard in less than 2 seconds now	2021-11-30 11:09:28 -05:00
Dan Funk	8c30df011b	Merge pull request #427 from sartography/workflow-status-script-548 ... Workflow status script #548	2021-11-30 10:51:57 -05:00
Dan Funk	c8c8c8b244	Merge pull request #424 from sartography/xls-xlsx-issue-540 ... Xls xlsx issue #540	2021-11-30 10:50:33 -05:00
mike cullerton	0f1ccd7db5	New script to check workflow status. ... Includes test and test workflow	2021-11-30 08:54:15 -05:00
Dan	455c1035f1	Performance upgrade to script.py - reduce the number of times we generate the augmented list of script functions for running python evals. ... Performance upgrade to study_service.py - Don't query on the whole WorkflowModel, just get the status that we need. Saves lots of complex joins. Performance upgrade to SpiffWorkflow - don't convert to box unless we have to do so.	2021-11-29 17:48:05 -05:00
Dan	e5b1daa3d9	Remove wild-card from uid search, it performs very badly. Add a bit of logging so we can easily see performance in the future.	2021-11-29 11:03:14 -05:00
Dan	8ec58fd6d7	Assure better error messages when parsing word documents with jinja syntax. ... I also have a pull request into the folks that run the python docx library to improve their error messages that we depend on here.	2021-11-23 14:38:48 -05:00
Dan	4a1285b8e0	When validating a workflow, don't run the master workflow multiple times, its a huge waste of time. ... Provide decent data when calling get_study_associate(s) scripts.	2021-11-22 17:17:19 -05:00
Dan	5bb7dbfb19	Improve the error messages returned from jinja template processing. Try to find the actual line with an error in it.	2021-11-22 14:46:33 -05:00
Dan	12b78c1f99	Value Errors should also alert us that we can't serialize the json. ... Enum Label was depending on the options attribute not existing in some situtations, which is a bad assumption. Rather, check for specific properties, and call back to using options as the default.	2021-11-22 12:37:10 -05:00
Dan	4d1f4429ff	Fixing a bug in enum_label that was not working when lookup up an select list from a spreadsheet. ... Assure we raise more thoughtful error messages when running getting exceptions in engine tasks. Field Options should always be available now due to a fix in Spiffworkflow.	2021-11-22 12:26:30 -05:00
Dan	7b02f46403	During validation, options were not being handled correctly for certain types of lookups.	2021-11-17 13:38:41 -05:00
mike cullerton	cb77db26a3	Minor edit, for clarity	2021-11-16 12:05:20 -05:00
mike cullerton	9f18484ebb	Grab exception when reading older xls spreadsheet into pandas ... Renamed `xls` variable to `xlsx`, so it makes more sense Added a hint to error_service for validation	2021-11-16 11:54:31 -05:00
Dan Funk	8c166bd029	Merge pull request #423 from sartography/test-protocol-builder-519 ... Test protocol builder #519	2021-11-11 11:49:57 -05:00
Dan	f4f3842059	Fixing a stupid mistake.	2021-11-11 11:45:35 -05:00
Dan	197b75c6bf	Quickfix - validation was failing if we had a date object in the task data, but this isn't really a problem. We now use the same JSON serializer as flask does, when doing validations, to better verify behavior with the front end.	2021-11-11 11:18:58 -05:00
mike cullerton	c7147274f0	Resolving issues from code review	2021-11-10 17:43:34 -05:00
mike cullerton	a8b7cd8bba	Merge branch 'dev' into test-protocol-builder-519	2021-11-10 16:32:34 -05:00
Dan Funk	037692f42b	Merge pull request #422 from sartography/chore/group-repeating-validation-536 ... Fixes #536 - Group + Repeating property validation	2021-11-10 15:28:04 -05:00
Dan Funk	e764bf937d	Merge pull request #421 from sartography/bug/validation_of_enum_label_failing_in_sub_workflows ... Validation was failing for enum_label() expressions when called withi…	2021-11-10 15:26:03 -05:00
Dan Funk	81f8aed68b	Merge pull request #420 from sartography/drop-tasklog-on-delete ... Delete Task log model when deleting a study	2021-11-10 15:20:11 -05:00
Dan Funk	84f364ce37	Merge branch 'dev' into chore/view-as-382	2021-11-10 15:16:20 -05:00
alicia pritchett	accdd281fa	Fixes #536 - Group + Repeating property validation ... For now, we should not allow both group and repeat properties on a field together.	2021-11-09 13:21:44 -05:00
mike cullerton	5cf742d955	remove unused import	2021-11-09 13:07:01 -05:00
Dan	d1eae3c15a	Validation was failing for enum_label() expressions when called within a sub-process. Possible (but unlikely) that this would occur outside validation.	2021-11-09 12:55:06 -05:00
alicia pritchett	aa1ba59bb1	Delete Task log model when deleting a study ... just a minor fix	2021-11-09 10:42:47 -05:00
mike cullerton	b193f56f35	Minor cleanup for readability.	2021-11-08 10:13:07 -05:00
mike cullerton	6f09b0d7dd	Added comment to _is_valid_study. ... Fixed get_required_docs. The data returned for get_required_dcs from UVA PB was *very* different than what we had.	2021-11-05 14:37:41 -04:00
mike cullerton	d186b24de3	UVA PB returns the info in a list. We want the dictionary in the list	2021-11-05 14:26:21 -04:00
mike cullerton	271d4da5ff	Merge branch 'dev' into test-protocol-builder-519	2021-11-05 10:29:20 -04:00
mike cullerton	6d548c2a74	*** WIP *** ... Committing to work on another ticket There are TODOs in study_service	2021-11-05 09:59:14 -04:00
Dan	9376d3deaf	Don't error out trying to send an error about invalid review types.	2021-11-04 13:32:57 -04:00
Dan Funk	3a36a48b88	Merge pull request #418 from sartography/convert-timestamp-499 ... Added ordered arguments to the get_localtime script #499	2021-11-03 14:28:57 -04:00
mike cullerton	b03e596dcf	One thing at a time; remove HSRNUMBER for now	2021-11-03 12:58:03 -04:00
mike cullerton	9c8ae36ba3	UVA IRB passes back Q_COMPLETE and HSRNUMBER	2021-11-03 12:40:43 -04:00
mike cullerton	7f163285c3	Test w/Alex's ID	2021-11-03 11:56:07 -04:00
mike cullerton	8be9a1968b	configure logging	2021-11-03 11:21:39 -04:00
mike cullerton	50d4159168	info log didn't show up. Maybe debug?	2021-11-03 10:36:27 -04:00
mike cullerton	8b6c8f9518	Logging to troubleshoot API call	2021-11-03 10:14:11 -04:00
mike cullerton	1f9c80d70d	Added ordered arguments to the get_localtime script ... Modified the workflow so the first task is a form with booleans that allows me to test all the permutations. Modified tests to cover all the permutations for calling the script	2021-11-03 08:36:24 -04:00
mike cullerton	47ead5ab45	Fixed validation bug. ... There is no element documentation available in the task, so we mock up the email content.	2021-11-02 10:00:41 -04:00
Dan Funk	8a6c1e1b51	Merge pull request #416 from sartography/bug/fix-hide-518 ... Fixes validation for #518	2021-11-01 16:22:24 -04:00