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291 Commits

Author SHA1 Message Date
mike cullerton
db1f3ba6ab Model and schema for new StudyCreator api endpoint 
Update StudyModel to use new model
 2021-12-06 14:36:34 -05:00
mike cullerton
6d548c2a74 *** WIP *** 
Committing to work on another ticket
There are TODOs in study_service
 2021-11-05 09:59:14 -04:00
mike cullerton
b03e596dcf One thing at a time; remove HSRNUMBER for now 2021-11-03 12:58:03 -04:00
mike cullerton
9c8ae36ba3 UVA IRB passes back Q_COMPLETE and HSRNUMBER 2021-11-03 12:40:43 -04:00
Dan Funk
c4f3a3ad0d
Merge pull request #413 from sartography/logging-script-513 
Logging script #513
 2021-11-01 15:41:38 -04:00
mike cullerton
b0c479420d New task_log model with schema, and migration 2021-10-27 12:19:09 -04:00
mike cullerton
7090a22a23 Remove content_html from the data we return from the email and get_email_data scripts 2021-10-26 16:28:50 -04:00
Dan
1c84bd9f1b Merge branch 'dev' into refactor/enums_as_key_value 2021-10-19 12:02:45 -04:00
Dan
5429e7da7d All enumerated lists used in web forms should contain a single value, not a dictionary of value/labels. 
Removing the spreadsheet.value.column and data.value.column so we just have value.column for both.
Improving the __str__ function in the ApiError class, to make debugging a little easier.
Adding a "validate_all" flask command, to help us track down any issues with current workflows in production (use this in concert with sync_with_testing)
Fixed logs of tests.
removed fact_runner.py, a very early and crufty bit of code.
 2021-10-19 10:13:43 -04:00
mike cullerton
dcb06f3753 Schema for returning email model 2021-10-13 11:42:01 -04:00
mike cullerton
699fc7daac Change column in email table from workflow_id to workflow_spec_id 2021-10-12 13:42:11 -04:00
mike cullerton
24932072dc Merge branch 'dev' into email-data-script-487 2021-10-07 12:30:13 -04:00
mike cullerton
10abf51f70 Added workflow_spec_id to WorkflowMetadata model, because the id is the workflow id, not the workflow_spec id. 
Then, we use workflow_spec_id in StudyService when looking for workflow status.
 2021-10-07 10:02:13 -04:00
mike cullerton
dab233a07a Add columns to email model for reporting 
Add Schema for email model
 2021-10-07 09:19:37 -04:00
alicia pritchett
7b6beae9c1 fixes frontend bailing out 
workflow id is workflow id
 2021-10-06 14:33:09 -04:00
mike cullerton
572ca1db6b Fixes for backend code after removing name column from workflow_spec and workflow_spec_category tables 2021-10-05 14:17:41 -04:00
mike cullerton
fcf538ca92 remove name column from workflow_spec and workflow_spec_category 2021-10-05 13:10:36 -04:00
Dan
c3995bfc3e Another try at getting the url correct. This paired with an additional setting on the server maybe. 2021-10-01 14:25:00 -04:00
Dan
5924ee48f4 One more try at getting the currect url. 2021-09-30 16:56:27 -04:00
Dan Funk
6b5a55df4c
Merge pull request #383 from sartography/feature/476_file_url 
URL for files
 2021-09-30 13:47:37 -04:00
Dan Funk
fbfb241c0b
Merge pull request #382 from sartography/feature/381_validate_field_types 
fixes #381 Assure that the field type provided is supported.  Catches errors suc…
 2021-09-30 13:46:40 -04:00
Dan
e002ffd363 Fixing a broken test. 2021-09-30 10:30:58 -04:00
alicia pritchett
d5d4496cd0 Admin flag on category + migration + updated test 2021-09-29 16:53:59 -04:00
Dan
8a4a53f028 Assure that the field type provided is supported. Catches errors such as adding a custom field type of 'text_area' rather than "textarea" 2021-09-29 14:05:45 -04:00
Dan
8e00f16eaa Assure that the field type provided is supported. Catches errors such as adding a custom field type of 'text_area' rather than "textarea" 2021-09-29 11:43:08 -04:00
Dan Funk
e4add14193
Merge pull request #378 from sartography/bug/246_user_ldap_refactor 
Bug/246 user ldap refactor
 2021-09-22 15:31:34 -04:00
Dan Funk
deff293fff
Merge pull request #376 from sartography/bug/468_missing_file_date 
fixes #448 - Missing  file date
 2021-09-22 15:29:32 -04:00
Dan
19104303de Refactor of the way we store and return details about users - All the details about a user, or individual associated with a study is returned within in an Ldap model. I've removed duplication between these models. This required some cleanup of the tests, and a migration that will drop the user details. 2021-09-22 13:16:25 -04:00
Dan
4b591a076f Adding importlib-resournces as a dependency, which is suddenly failing on Travis, likely due to different versions of Python as I try to upgrade to 3.9 2021-09-21 14:36:57 -04:00
mike cullerton
8b8cfde6cb Add short_name and proposal_name to the study model 2021-09-17 11:53:45 -04:00
Dan
5c0d30becb We just needed to allow read_only_expression 2021-09-03 09:48:16 -04:00
mike cullerton
3d7dadc319 Model changes and revision file for task_spec column to file and data_store models 2021-08-26 10:36:10 -04:00
Mike Cullerton
5692f7d377
Merge pull request #359 from sartography/413-LibraryCleanup 
413 library cleanup
 2021-08-18 13:39:37 -04:00
Kelly McDonald
b4ecb0f97a Add backref cascade and make changes to the spot where we delete so it loads objects into memory and then uses the SQLAlchemy plumbing to make sure that the db object gets cleaned up. 2021-08-18 08:25:17 -04:00
Leashys
032aad9bc4 Fixes #383 - Timestamp on files is UTC? 
also this includes the shield test thing for the boolean_type property whoopsie
 2021-08-17 13:04:24 -04:00
mike cullerton
1f82143aea Remove HSR Number from models 2021-08-16 12:50:09 -04:00
mike cullerton
46d7b13326 Start to remove HSR Number 2021-08-16 12:09:02 -04:00
Dan
848c2e622f Always use a schema to define what is being returned, it enforces consistency of the API and internally we can depend on well defined objects. 2021-08-10 16:16:08 -04:00
Dan
913c12c02d Merge branch 'dev' into bug/pi_name_missing_246 2021-08-10 15:06:52 -04:00
Kelly McDonald
41ad7935f8 Merge branch 'dev' into 367-Call-Activity 
# Conflicts:
#	Pipfile.lock
 2021-07-29 09:28:21 -04:00
Kelly McDonald
b857fddbad commit in intermediate changes to work on a bug 2021-07-26 13:00:11 -04:00
Kelly McDonald
48516e4009 Parent side working 2021-07-22 10:23:05 -04:00
Kelly McDonald
2455495457 got library side working - still need to have parent working 2021-07-22 10:20:34 -04:00
NWalker4483
4632c6374f Merge branch 'dev' into bug/missing_pi_name_246 
# Conflicts:
#	crc/api.yml
#	crc/services/study_service.py
 2021-07-20 11:44:11 -04:00
mike cullerton
b0cf74fa3d Merge branch 'dev' into add-by-user-61 
# Conflicts:
#	tests/files/test_files_api.py
 2021-07-07 10:46:50 -04:00
mike cullerton
c11b5cfb29 Add user_uid to api output 2021-07-07 08:18:02 -04:00
mike cullerton
23be257db0 Add user_uid column to file_data table 2021-07-06 17:07:47 -04:00
Dan
cafdc4d100 Removing an unneeded modification to the database structure for lookup tables. 2021-07-06 14:02:07 -04:00
Dan
1b1a994360 Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them. 
Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
 2021-07-06 13:10:20 -04:00
Kelly McDonald
dce1d86e93 commit changes before looking at something else 2021-07-06 10:34:57 -04:00