1203 Commits

Author	SHA1	Message	Date
Kelly McDonald	c029dad688	Convert some datetime columns to include timezone	2021-04-28 10:00:22 -04:00
Kelly McDonald	71a63c049d	Merge remote-tracking branch 'origin/dev' into dev	2021-04-27 12:16:36 -04:00
Dan	248ca6a33a	Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees) ... todo: Create a ticket to assure we don't get in an infinite loading loop.	2021-04-27 12:14:37 -04:00
Kelly McDonald	799747d638	Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane.	2021-04-27 12:13:49 -04:00
Dan Funk	21e95b106d	Merge pull request #295 from sartography/299-document-datastore ... Add file_data_get and file_data_set functions that can be accessed in…	2021-04-26 12:49:46 -04:00
Dan	047c68b2b5	Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models	2021-04-26 12:31:22 -04:00
Mike Cullerton	39fcab3730	Merge branch 'dev' into launch-workflow-outside-study-204	2021-04-26 10:27:32 -04:00
Kelly McDonald	40ee20ecca	Add file_data_get and file_data_set functions that can be accessed in a bpmn script function ... Fixes #299	2021-04-26 09:55:28 -04:00
Kelly McDonald	d3d7eeb309	Add file_data_get and file_data_set functions that can be accessed in a bpmn script function ... Fixes #299	2021-04-26 09:41:14 -04:00
mike cullerton	077b68c1e2	When creating a workflow for a study, set the user_id to None	2021-04-26 08:46:19 -04:00
mike cullerton	f17a9dc0f4	Modified get_users_assigned_to_task. ... If we are running a standalone workflow, only return the current user.	2021-04-26 08:45:08 -04:00
mike cullerton	b6f5001687	Added methods for the 2 new api endpoints	2021-04-26 08:43:14 -04:00
mike cullerton	22432aaf2c	study_id is no longer required for task events	2021-04-26 08:36:09 -04:00
mike cullerton	c0655c9d03	Added standalone column to workflow_spec ... Added `user_id` column to workflow	2021-04-26 08:33:55 -04:00
mike cullerton	fa818bd751	Code for the 2 new api endpoints ... Also modified `update_task` so that it no longer requires a study_id	2021-04-26 08:31:12 -04:00
mike cullerton	5936b2e8ef	Created 2 api endpoints; one to get a workflow from a workflow spec, and one to list all standalone workflow specs. ... Also added `standalone` argument to workflow_spec schema properties	2021-04-26 08:27:24 -04:00
Dan	dd7c5fd1c1	Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files.	2021-04-23 16:16:19 -04:00
Dan	cf051a7d4f	Merge branch 'dev' into 277-Document-pane ... # Conflicts: # crc/api/file.py	2021-04-21 14:09:44 -04:00
Dan	ecff7d20d3	Adding a test for the new endpoint and cleaning up the API documenation	2021-04-21 14:00:19 -04:00
Kelly McDonald	19e94da6b6	Fix slight bug in expansion code, ... a non-expanded node was causing all parent levels to not expand.	2021-04-20 11:11:11 -04:00
Kelly McDonald	e2197ddab9	Changes to support the frontend data pane ... fixes #277 and requires frontend branch 277-document-pane	2021-04-20 08:12:27 -04:00
Dan Funk	277beb345f	Merge pull request #290 from sartography/auto-set-primary-bpmn-142 ... Auto set primary bpmn #142	2021-04-16 13:36:02 -04:00
mike cullerton	2374400542	Automatically set the first workflow for a workflow_spec to primary	2021-04-15 12:39:12 -04:00
mike cullerton	91e80d01bc	Added delete_files argument to the workflow_processor reset method. ... Added code to delete the files when delete_files is True.	2021-04-15 11:25:58 -04:00
mike cullerton	3332b9c7c0	Added delete_files argument to the restart_workflow api method, and pass it along to WorkflowProcessor.reset	2021-04-15 11:23:20 -04:00
mike cullerton	4615649938	Added delete_files argument to the workflow restart api endpoint	2021-04-15 11:21:51 -04:00
Kelly McDonald	949f3be403	give an endpoint to return all files associated with a study	2021-04-12 12:23:33 -04:00
Dan	6427a54d74	Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary.	2021-04-09 08:40:58 -04:00
Dan	41310b6879	Allow both a keyword argument, a single argument when calling delete_file. And call it "delete_file" to be more conssitent with existing scripts.	2021-04-08 13:42:17 -04:00
Dan Funk	611c72f431	Merge pull request #284 from sartography/delete-uploaded-file-script-283 ... Delete uploaded file script #283	2021-04-08 12:42:30 -04:00
mike cullerton	f8428378e2	You can now delete a document or list of documents. ... Also, refactored the fancy bits into `process_document_deletion`	2021-04-05 15:11:06 -04:00
mike cullerton	f0f5cff8d7	Added some checks to do_task to look for valid irb_doc_code and whether or not we found a file ... Added code for do_task_validate	2021-04-05 13:15:09 -04:00
Dan	4fd8fd13f8	Remove approvals from the study_info script. It was broken, and isn't really possible in this way anymore	2021-04-05 12:52:23 -04:00
Dan	501487b31c	Assure we convert to box for validations as well, and test the bloodly snot out of this.	2021-04-05 12:47:50 -04:00
Dan	727aa72e18	Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks.	2021-04-05 11:31:06 -04:00
mike cullerton	9317e49e65	Merge branch 'dev' into delete-uploaded-file-script-283	2021-04-05 10:40:33 -04:00
mike cullerton	0eb6291740	Script to delete an IRB document. Takes an irb_document argument. ... Deletes all files associated with the workflow with that IRB document code	2021-04-05 08:55:02 -04:00
Dan	dcb4e7b736	fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig.	2021-04-02 17:58:27 -04:00
Dan	3ad3a086ba	Merge branch 'dev' into 263-optimize-dashboard	2021-04-02 17:12:02 -04:00
Dan	2100f27976	fixing the api.yml file which was starting to throw errors when updating the libraries. ... Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this. Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.	2021-04-02 17:10:05 -04:00
mike cullerton	d7894f43b6	These changes relate to changes in PB Mock ticket 273, where we removed Q_COMPLETE as a column in the PB Mock Study table. It is now a relationship. ... Here, we removed Q_COMPLETE from ProtocolBuilderStudy and ProtocolBuilderStudySchema definitions to accommodate the PB Mock changes. ***This push will need to be coordinated with ticket 273***	2021-04-02 12:01:00 -04:00
Kelly McDonald	116bf5e7aa	Merge branch 'dev' into 263-optimize-dashboard ... # Conflicts: # crc/services/study_service.py	2021-03-31 10:20:33 -04:00
Kelly McDonald	9084866015	Update error message - it may be that we should spend a bit and see if we can make the Box error	2021-03-31 10:17:08 -04:00
Kelly McDonald	60f5be1aef	Check in - pending change from @cullerton	2021-03-30 12:10:49 -04:00
Dan Funk	b5d4df595f	Merge pull request #271 from sartography/master-workflow-status-messages-222 ... Master workflow status messages 222	2021-03-26 20:52:24 -04:00
Dan	ded11ddd82	fixing a code smell	2021-03-26 20:25:34 -04:00
Dan Funk	e79e810ae1	Merge pull request #273 from sartography/modify-email-template-215 ... Change location of `CR Connect` string. Move it left, closer to the logo	2021-03-26 19:50:16 -04:00
Dan Funk	123ec50912	Merge pull request #272 from sartography/infinite-validations-262 ... Infinite validations 262	2021-03-26 19:49:42 -04:00
Dan	b64b52e7cb	Assure that we properly return the new status message over the api calls.	2021-03-26 19:47:31 -04:00
Dan	ac4877fecf	Merge remote-tracking branch 'origin/dev' into master-workflow-status-messages-222	2021-03-26 17:47:57 -04:00