mike cullerton
b10fdac32c
Create run_master_spec method in BaseTest
2022-05-12 10:06:57 -04:00
mike cullerton
0eff50ca13
Add state_message to test
2022-05-09 09:08:52 -04:00
mike cullerton
c28e9a5bdd
Make sure we update workflow state when processing the master workflow
2022-05-06 14:09:23 -04:00
mike cullerton
27c2b95f31
Pass update_status=True in the test when calling the get_study api endpoint
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This allows master_workflow_results to be set, which allows categories to be processed in StudyService.get_study()
2022-03-18 17:01:36 -04:00
Dan
a401c41b23
Setting a minimum date for which to import studies.
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Merging in code to improve performance of calculating percent complete for a study.
Assureing we have a primary investigator for the front page (another merge)
2022-03-18 15:27:45 -04:00
Dan
b7489aea43
merging in PI Name changes from Alicia's #499 PR.
2022-03-18 12:30:20 -04:00
alicia pritchett
b9b8210f8a
rm pi id refs
2022-03-18 12:04:20 -04:00
alicia pritchett
b6b28ed127
fix tests remove pi id
2022-03-18 11:56:56 -04:00
Dan
ef5aca4fe4
ReviewType now comes back with the user studies, so we don't need to make an additional query to get it.
2022-03-18 09:59:10 -04:00
mike cullerton
199fe0626a
Assert that if we get null for DATELASTMODIFIED, we use the value in DATECREATED
2022-03-17 15:56:44 -04:00
Dan
788e40a998
death to load_example_data() !!!!!
2022-02-09 22:13:02 -05:00
Dan
f12c4aba52
Refactor the workflow_spec_service so it doesn't cache anything, it always reads what it needs from the file system.
2022-02-09 21:06:55 -05:00
Dan
de6d7eee84
nearly all study tests work.
2022-02-09 12:03:45 -05:00
alicia pritchett
a4fb00b0ed
remove bad imports
2022-02-07 15:28:52 -05:00
Dan
4ec6e403f5
1. Created a UserFileService, so it's clear what we use when for File Services, UserFiles, SpecFiles, and ReferenceFiles each function differently.
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2. Reference Files and Spec Files are written to disk, they do not exist in the database at all.
2022-02-02 12:59:56 -05:00
mike cullerton
88a8c96bd6
The reference document is already created in load_example_data
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This lead to a failing test after cleaning up the way we add/update files
2022-01-12 15:07:57 -05:00
mike cullerton
4df2ed6ce4
*** WIP ***
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Failing tests, and missing functionality.
Committing to get stuff on Github.
2022-01-11 15:30:22 -05:00
mike cullerton
9785a2fe5a
Updated for new ProtocolBuilderCreatorStudy model and schema
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Added with `session.no_autoflush` to stop rollback during test
2021-12-06 14:42:34 -05:00
alicia pritchett
ea4e382f06
Fixing some tests
2021-10-06 15:24:58 -04:00
mike cullerton
da894219c5
Changes to tests after removing name column from workflow_spec and workflow_spec_category tables.
2021-10-05 14:20:03 -04:00
alicia pritchett
d5d4496cd0
Admin flag on category + migration + updated test
2021-09-29 16:53:59 -04:00
mike cullerton
cd3d17862a
Add task_spec_name to a bunch of tests
2021-08-26 10:43:28 -04:00
mike cullerton
febcb1ac5b
Clarified my comments
2021-08-13 12:36:43 -04:00
mike cullerton
58119c8969
Modified test_get_all_studies so they don't fail looking for studies that are open for enrollment
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We will soon have a new way to automatically set study status to `Open for Enrollment`, so I left the failing tests there and commented them out for now.
2021-08-13 12:32:11 -04:00
Dan
61ad371680
Clean up the file api so we don't have a bunch of extra stuff in there. Just include the raw data from the document spraedsheet if it is available.
2021-06-22 15:08:08 -04:00
Dan
07eb3f9ca8
Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously.
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Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
2021-06-18 16:41:55 -04:00
Dan
8f28970f92
Resolving an alembic conflict.
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Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens. This seems to be working locally.
2021-05-04 13:39:49 -04:00
Kelly McDonald
2b9cee6b89
Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC
2021-04-29 10:25:28 -04:00
Kelly McDonald
e2197ddab9
Changes to support the frontend data pane
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fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
Dan
80ff8a6212
Allows us to delete a study even if there are emails, and associated study users connected to that study.
2021-03-09 13:31:26 -05:00
Kelly McDonald
003bf2f9b9
Remove Approvals per ticket 183
2021-02-16 09:05:29 -05:00
Kelly McDonald
3a1160efac
refactored calls into a service
2020-12-11 11:41:32 -05:00
Dan Funk
d4c5e297cc
Merge remote-tracking branch 'origin/dev' into fix/delete_workflow_endpoint
2020-08-17 15:09:11 -04:00
Dan Funk
c09441d019
Merge branch 'dev' into fix/delete_workflow_endpoint
2020-08-17 15:07:58 -04:00
Dan Funk
85ad477b2b
Some minor cleanup on the study status and automatic events. I wanted to avoid having one database model automatically generating other database models as a side effect. The study service now has full responsiblity to recording study events.
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To help in running tests, adding __init__.py methods to all the test directories.
2020-08-17 14:56:00 -04:00
Carlos Lopez
369fe4bb35
Automatic events refactoring
2020-08-14 08:36:46 -06:00
Carlos Lopez
aa010272cc
Automatic event creation in study creation
2020-08-14 08:36:10 -06:00
Aaron Louie
9a31d591ae
Adds user uid and cascades study event in study model. Fixes migration to properly downgrade enums.
2020-08-12 10:13:23 -04:00
Carlos Lopez
79c14ad23c
Unlinking file from workflow instead of trying to delete it
2020-08-10 22:23:20 -06:00
Carlos Lopez
cef7c48be2
Adding tests
2020-08-10 21:18:41 -06:00
Carlos Lopez
4fcba113b8
Fixing tests
2020-07-31 11:49:04 -06:00
Carlos Lopez
5d23223e51
New study status update
2020-07-30 21:03:11 -06:00
Carlos Lopez
de49397549
Adjustings tests for protocol builder status changes
2020-07-29 10:51:34 -06:00
Carlos Lopez
73a6b7adf1
Fixing tests
2020-07-29 10:25:57 -06:00
Carlos Lopez
6aa21638de
Updating properly study status & fixing tests
2020-07-29 10:25:57 -06:00
Dan Funk
0ea4c13d09
Convert protocol builder status to always be in lower case in order to better match the front end. And also fixing an issue with the multi_instance that is oddly broken suddenly, and I don't know why.
2020-07-28 17:16:48 -04:00
Dan Funk
300026cbc8
Expanding the task events endpoint to accept workflow and study ids as additional filters.
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Removing events from the study endpoint, too noisy.
2020-07-28 10:16:48 -04:00
Dan Funk
0cb480801b
Provide event data on the Study api endpoint.
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Speed up the tests a little, because that got out of hand. Need to dig into what is causing this problem.
2020-07-27 17:05:01 -04:00
Dan Funk
d85ca1ce51
Whenever a workflow is loaded or updated, add events to the TaskEvent table with assignments for the next set of ready tasks, along with who should complete those tasks.
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Add the lane information to the Task model.
Drop the foreign key constraint on the user_uid in the task log, as we might create tasks for users before they ever log into the system.
Add a new endpoint to the API called task events. It should be possible to query this and get a list of all tasks that need a users attention.
The task events returned include detailed information about the workflow and study as sub-models
Rename all the actions in event log to things that are easier to pass over the api as arguments, make this backwards compatible, updating existing names in the database via the migration.
Throughly test the navigation and task details as control of the workflow is passed between two lanes.
2020-07-14 22:16:44 -04:00
Carlos Lopez
a302208890
Updating test for study with approvals
2020-07-07 08:32:41 -06:00
