Dan Funk
6e3b6c2635
Assure that files uploaded through web forms and files generated from templates can be cross-referenced to known document requirements from the protocol builder. Configurators can control this by managing an XLS Spreadsheet called "irb_documents.xslx".
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Required Documents is becoming complicated, so making this it's own script task, removing it from study_info.py
The file_service is now very aware of this irb_documents file, so it will always need to exist. We seed this file
during setup, but it can be overwritten by the configurator.
2020-03-19 17:14:20 -04:00
Dan Funk
e91d7aff2f
Fixes #11 : adding a delete endpoint for studies. It won't delete studies that have workflows, you have to delete those first)
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Removing the "default" error response from the api.yml, it was all noise.
2020-03-09 15:12:40 -04:00
Dan Funk
697d930eab
Modify the workflow processor to accept a workflow model - so it can take on more of the responsibilities of updating this model and managing versions.
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Changing the version information so that it includes the numbers of the files used to generate the serialized workflow.
2020-03-05 13:25:28 -05:00
Dan Funk
c5cee4761e
Improve version handling of files. Consolidate more of this logic in FileService. Place the version on the actual data model, not the file model, so the file model remains the same, and we just version the data associated with it.
2020-03-04 13:40:25 -05:00
Aaron Louie
f3068e68db
Adds user to example data. Requires login before adding/updating a study.
2020-02-27 10:30:16 -05:00
Dan Funk
2cc6010c8d
Protocol builder connections
2020-02-20 13:30:04 -05:00
Dan Funk
a642593e3d
Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.
2020-02-18 16:38:56 -05:00
Dan Funk
709bae76b2
Removing a rogue comma that was causing havoc. Also, don't fail if a mock already exists in the test database.
2020-02-11 11:11:21 -05:00
Dan Funk
ec4df2b3fa
Cleaning up the tests and making it easier to test workflows without adding them to the example data structure.
2020-02-04 16:49:28 -05:00
Aaron Louie
a3b6e4fc7f
Fixes import paths
2020-01-24 11:52:52 -05:00
Aaron Louie
0a44ef04d7
Slight refactoring - makes BaseTest inherit from TestCase. Checks that data loader works properly
2020-01-24 09:35:14 -05:00
Aaron Louie
fe15799ee1
Adds type hinting to db and session to fix Pycharm autocomplete. Replaces db.session with session.
2020-01-14 11:45:12 -05:00
Dan Funk
fb465531ca
Add the ability to delete a workflow.
2019-12-30 13:15:39 -05:00
Dan Funk
b54bd49cf4
Allow for clearing out the database.
2019-12-30 13:03:57 -05:00
Dan Funk
0b71833946
Adding file management. Files are stored in the database along with basic meta data.
2019-12-27 13:50:03 -05:00
Dan Funk
9861f6baf3
Lots and lots of random stuff as I organize code and get things to make sense.
2019-12-18 14:02:17 -05:00
Dan Funk
9280aab0b6
name tests so they get picked up and run.
2019-11-21 12:01:51 -05:00
