sartography/cr-connect-workflow
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61 Commits

Author SHA1 Message Date
Dan
4305b36b74 Removed total_tasks and completed_tasks - as they are no longer used by the front end, and were dubious as hell to begin with. 
Upraded SpiffWorkflow and now use th new get_subprocess_specs
updated the calculate_stats in the workflow processor - as the serialization had changed drastically, and needed to debug some performance issues.
Added a get_navigation method that will calcuate a basic navigation list MUCH faster than using the get_flat_nav_list in Spiffworkflows Navigation object.
Modified a hellton of tests because we don't have total_task and completed_task counts, or a complex nested navigation list anymore.
 2022-07-20 12:10:23 -04:00
mike cullerton
644629fbc8 Bug deleting a study 2022-07-12 15:07:19 -04:00
Dan Funk
d434602f55
Merge pull request #551 from sartography/chore/current-user-changes-755 
Chore/current user changes #755  and lane permissions #737
 2022-06-03 15:45:49 -04:00
mike cullerton
6911ab7aae Fixes for failing tests after removing current_user from task data 2022-05-31 16:53:15 -04:00
mike cullerton
251ff921ff clean up imports 2022-05-26 13:36:10 -04:00
mike cullerton
95c915a434 Remove code that doesn't let master workflow set state and state_message for admin sandbox workflows 
Remove test for this feature
 2022-05-26 13:35:30 -04:00
mike cullerton
132a140d5a Make sure the Master Workflow doesn't change the state for workflows in an Admin Sandbox 2022-05-24 15:33:56 -04:00
mike cullerton
b10fdac32c Create run_master_spec method in BaseTest 2022-05-12 10:06:57 -04:00
mike cullerton
0eff50ca13 Add state_message to test 2022-05-09 09:08:52 -04:00
mike cullerton
c28e9a5bdd Make sure we update workflow state when processing the master workflow 2022-05-06 14:09:23 -04:00
mike cullerton
27c2b95f31 Pass update_status=True in the test when calling the get_study api endpoint 
This allows master_workflow_results to be set, which allows categories to be processed in StudyService.get_study()
 2022-03-18 17:01:36 -04:00
Dan
a401c41b23 Setting a minimum date for which to import studies. 
Merging in code to improve performance of calculating percent complete for a study.
Assureing we have a primary investigator for the front page (another merge)
 2022-03-18 15:27:45 -04:00
Dan
b7489aea43 merging in PI Name changes from Alicia's #499 PR. 2022-03-18 12:30:20 -04:00
alicia pritchett
b9b8210f8a rm pi id refs 2022-03-18 12:04:20 -04:00
alicia pritchett
b6b28ed127 fix tests remove pi id 2022-03-18 11:56:56 -04:00
Dan
ef5aca4fe4 ReviewType now comes back with the user studies, so we don't need to make an additional query to get it. 2022-03-18 09:59:10 -04:00
mike cullerton
199fe0626a Assert that if we get null for DATELASTMODIFIED, we use the value in DATECREATED 2022-03-17 15:56:44 -04:00
Dan
788e40a998 death to load_example_data() !!!!! 2022-02-09 22:13:02 -05:00
Dan
f12c4aba52 Refactor the workflow_spec_service so it doesn't cache anything, it always reads what it needs from the file system. 2022-02-09 21:06:55 -05:00
Dan
de6d7eee84 nearly all study tests work. 2022-02-09 12:03:45 -05:00
alicia pritchett
a4fb00b0ed remove bad imports 2022-02-07 15:28:52 -05:00
Dan
4ec6e403f5 1. Created a UserFileService, so it's clear what we use when for File Services, UserFiles, SpecFiles, and ReferenceFiles each function differently. 
2. Reference Files and Spec Files are written to disk, they do not exist in the database at all.
 2022-02-02 12:59:56 -05:00
mike cullerton
88a8c96bd6 The reference document is already created in load_example_data 
This lead to a failing test after cleaning up the way we add/update files
 2022-01-12 15:07:57 -05:00
mike cullerton
4df2ed6ce4 *** WIP *** 
Failing tests, and missing functionality.
Committing to get stuff on Github.
 2022-01-11 15:30:22 -05:00
mike cullerton
9785a2fe5a Updated for new ProtocolBuilderCreatorStudy model and schema 
Added with `session.no_autoflush` to stop rollback during test
 2021-12-06 14:42:34 -05:00
alicia pritchett
ea4e382f06 Fixing some tests 2021-10-06 15:24:58 -04:00
mike cullerton
da894219c5 Changes to tests after removing name column from workflow_spec and workflow_spec_category tables. 2021-10-05 14:20:03 -04:00
alicia pritchett
d5d4496cd0 Admin flag on category + migration + updated test 2021-09-29 16:53:59 -04:00
mike cullerton
cd3d17862a Add task_spec_name to a bunch of tests 2021-08-26 10:43:28 -04:00
mike cullerton
febcb1ac5b Clarified my comments 2021-08-13 12:36:43 -04:00
mike cullerton
58119c8969 Modified test_get_all_studies so they don't fail looking for studies that are open for enrollment 
We will soon have a new way to automatically set study status to `Open for Enrollment`, so I left the failing tests there and commented them out for now.
 2021-08-13 12:32:11 -04:00
Dan
61ad371680 Clean up the file api so we don't have a bunch of extra stuff in there. Just include the raw data from the document spraedsheet if it is available. 2021-06-22 15:08:08 -04:00
Dan
07eb3f9ca8 Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously. 
Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
 2021-06-18 16:41:55 -04:00
Dan
8f28970f92 Resolving an alembic conflict. 
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens.  This seems to be working locally.
 2021-05-04 13:39:49 -04:00
Kelly McDonald
2b9cee6b89 Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC 2021-04-29 10:25:28 -04:00
Kelly McDonald
e2197ddab9 Changes to support the frontend data pane 
fixes #277 and requires frontend branch 277-document-pane
 2021-04-20 08:12:27 -04:00
Dan
80ff8a6212 Allows us to delete a study even if there are emails, and associated study users connected to that study. 2021-03-09 13:31:26 -05:00
Kelly McDonald
003bf2f9b9 Remove Approvals per ticket 183 2021-02-16 09:05:29 -05:00
Kelly McDonald
3a1160efac refactored calls into a service 2020-12-11 11:41:32 -05:00
Dan Funk
d4c5e297cc Merge remote-tracking branch 'origin/dev' into fix/delete_workflow_endpoint 2020-08-17 15:09:11 -04:00
Dan Funk
c09441d019 Merge branch 'dev' into fix/delete_workflow_endpoint 2020-08-17 15:07:58 -04:00
Dan Funk
85ad477b2b Some minor cleanup on the study status and automatic events. I wanted to avoid having one database model automatically generating other database models as a side effect. The study service now has full responsiblity to recording study events. 
To help in running tests, adding __init__.py methods to all the test directories.
 2020-08-17 14:56:00 -04:00
Carlos Lopez
369fe4bb35 Automatic events refactoring 2020-08-14 08:36:46 -06:00
Carlos Lopez
aa010272cc Automatic event creation in study creation 2020-08-14 08:36:10 -06:00
Aaron Louie
9a31d591ae Adds user uid and cascades study event in study model. Fixes migration to properly downgrade enums. 2020-08-12 10:13:23 -04:00
Carlos Lopez
79c14ad23c Unlinking file from workflow instead of trying to delete it 2020-08-10 22:23:20 -06:00
Carlos Lopez
cef7c48be2 Adding tests 2020-08-10 21:18:41 -06:00
Carlos Lopez
4fcba113b8 Fixing tests 2020-07-31 11:49:04 -06:00
Carlos Lopez
5d23223e51 New study status update 2020-07-30 21:03:11 -06:00
Carlos Lopez
de49397549 Adjustings tests for protocol builder status changes 2020-07-29 10:51:34 -06:00