Commit Graph

703 Commits

Author SHA1 Message Date
Carlos López 833f65fe8c
Merge pull request #75 from sartography/feature/add_review_model
Feature/add review model
2020-05-22 17:30:01 -06:00
Dan Funk 148e86bb42 Building out the boilerplate code to make pushing forward on this a little friendlier.
There is an approval api file, and approval model file and an approval test file.
2020-05-22 18:25:00 -04:00
Dan Funk 571c1d7d24 Merge branch 'feature/rrp-endpoints' into feature/disable_protocol_builder 2020-05-22 16:18:33 -04:00
Dan Funk d1606ffb1a forgot to include the new empty master workflow, which allows the tests to all pass. 2020-05-22 15:31:38 -04:00
Dan Funk 1017bb1897 On the tools/render_docx api, allow sending the json data in the body, rather than as a ludicrous long get parameter. Silly Dan. 2020-05-22 15:30:22 -04:00
Aaron Louie 2e94ab1584 Only runs upgrade if env variable says to. 2020-05-22 14:55:55 -04:00
Dan Funk 503c1c8f18 Allow disabling the Protocol Builder
PB_ENABLED can be set to false in the configuration (either in a file called instance/config.py, or as an environment variable)

Added a check in the base_test, to assure that we are always running tests with the test configuration, and bail out otherwise.  Setting TESTING=true as an environment variable will get this, but so well the correct ordering of imports. Just be dead certain the first file every test file imports is base_test.py.

Aaron was right, and we call the Protocol Builder in all kinds of awful places.  But we don't do this now.  So Carlos, you should have the ability to reuse a lot of the logic in the study_service now.

I dropped the poorly named "study-update" endpoint completely.  We weren't using it. POST and PUT to Study still work just fine for doing exactly that.

All the tests now run and pass with the Protocol builder disabled. Tests that specifically check PB behavior turn it back on for the test, or mock it out.
2020-05-22 14:37:49 -04:00
Dan Funk 992a85e9a5 Rough idea of what the Approvals model will look like. 2020-05-22 11:56:43 -04:00
Carlos Lopez a0c884499e Merge branch 'feature/rrp-endpoints' of github.com:sartography/cr-connect-workflow into feature/rrp-endpoints 2020-05-22 09:46:25 -06:00
Carlos Lopez 1ed7930aab Endpoint for studies with files 2020-05-22 09:46:03 -06:00
Dan Funk 8b3dc8e0ca Merge branch 'dev' into feature/rrp-endpoints 2020-05-22 11:41:11 -04:00
Aaron Louie dd4455f2ce
Merge pull request #73 from sartography/staging
Staging
2020-05-22 11:25:25 -04:00
Dan Funk b490005af7 dropping the remaining config stuff for flask_sso.
updaing the user 'sso' endpoint to provide additional information for debugging.
Pulling information from ldap to stay super consistent on where we get our information.
2020-05-22 09:50:18 -04:00
Dan Funk 1cc9a60bfe clearing out the remaining references to the flask_sso library. 2020-05-22 08:01:33 -04:00
Dan Funk 4627318818 Dropping flask_sso library in favor of reading from the headers directly. Updating login to read from ldap once it has the user_id. Adding more information to the sso endpoint. 2020-05-22 07:55:58 -04:00
Dan Funk b3ae9ee770 changing the mapping, because 'Uid' not 'uid' 2020-05-21 16:28:34 -04:00
Dan Funk 0265db7146 adding an /sso endpoint for testing. 2020-05-21 16:02:45 -04:00
Dan Funk 4628834106 just a few more logging details. 2020-05-21 12:11:35 -04:00
Aaron Louie d76c18d329 Installs curl 2020-05-20 20:13:09 -04:00
Carlos Lopez abc90cdcb1 Adding serialiazer for study files 2020-05-20 15:10:22 -06:00
Aaron Louie d0f380e224 Uses Python 3.6.9 2020-05-20 16:49:55 -04:00
Aaron Louie 595364b415 Merge branch 'ec2/dev' into dev 2020-05-20 16:34:53 -04:00
Aaron Louie b915794000 Fixes more paths. 2020-05-20 15:57:54 -04:00
Dan Funk de7cebbd7d o 2020-05-20 15:32:40 -04:00
Aaron Louie 616a47bd10 Fixes file paths 2020-05-20 15:17:03 -04:00
Dan Funk 5f793db606 It is critical that the Pipfile python version matches the python version on the server. 2020-05-20 15:07:16 -04:00
Aaron Louie 865188795f Adds git. Purges apt cache after 2020-05-20 15:04:41 -04:00
Aaron Louie 97130e504a Adds git 2020-05-20 14:57:03 -04:00
Aaron Louie 91a228d3f4 Trying to slim down the size of the image 2020-05-20 14:33:39 -04:00
Dan Funk 2c407ae607 adding requirements.txt and a way to regenerate it. 2020-05-20 14:21:39 -04:00
Dan Funk 57615edde3 adding wsgi configuration. 2020-05-20 14:01:09 -04:00
Dan Funk 8647ebee42 Moving spiff back to master branch, with fixes for parallel, and performance improvements. 2020-05-20 10:57:20 -04:00
Aaron Louie 976285fa3b
Merge pull request #72 from sartography/testing
Testing
2020-05-20 10:45:00 -04:00
Aaron Louie 3e50b992a2
Merge pull request #71 from sartography/dev
Dev
2020-05-20 10:16:01 -04:00
Aaron Louie 51ece390f3
Merge branch 'testing' into dev 2020-05-20 10:03:41 -04:00
Aaron Louie 3808786f11 Merge branch 'rrt/dev' into dev 2020-05-20 10:02:44 -04:00
Aaron Louie 48f9873548 Adding yet another flush, because Travis builds keep failing due to database race condition issues in this method. 2020-05-20 10:02:30 -04:00
Aaron Louie b8dc8bd24e
Merge pull request #70 from sartography/staging
Staging
2020-05-20 09:28:38 -04:00
Aaron Louie c6de4a60e7
Merge pull request #69 from sartography/testing
Testing
2020-05-20 09:02:09 -04:00
Aaron Louie 6f60b04b98
Merge pull request #68 from sartography/dev
Dev
2020-05-20 08:45:16 -04:00
Aaron Louie e454993f6e
Merge branch 'testing' into dev 2020-05-20 00:14:51 -04:00
Aaron Louie 9fd3e8f1a5
Merge pull request #67 from sartography/rrt/dev
Rrt/dev
2020-05-20 00:14:21 -04:00
Aaron Louie fc63d26322
Merge pull request #66 from sartography/feature/docx_images
Feature/docx images
2020-05-20 00:13:50 -04:00
Aaron Louie 58189285ad Cleans up 2020-05-20 00:12:48 -04:00
Aaron Louie 2b5687c3a3 Fixes pernicious bug where template document versions were not being updated properly, and template completion script was not honoring version numbers 2020-05-20 00:10:32 -04:00
Aaron Louie 481a9ed04c Gets image ids from task data and Injects images into jinja docx 2020-05-19 21:51:54 -04:00
Dan Funk 2f86a25032
Merge pull request #65 from sartography/feature/ldap_lookup
Quick cleanup, adding a space
2020-05-19 16:24:40 -04:00
Dan Funk c4f2bd8dc6 Quick cleanup, adding a space 2020-05-19 16:23:20 -04:00
Dan Funk 66a3304541
Merge pull request #63 from sartography/feature/ldap_lookup
ldap lookup.
2020-05-19 16:22:02 -04:00
Dan Funk 951710d762 ldap lookup.
Refactored calls into a new lookup_service to keep things tidy.

New keys for all enum/auto-complete fields:
    PROP_OPTIONS_FILE = "spreadsheet.name"
    PROP_OPTIONS_VALUE_COLUMN = "spreadsheet.value.column"
    PROP_OPTIONS_LABEL_COL = "spreadsheet.label.column"
    PROP_LDAP_LOOKUP = "ldap.lookup"
    FIELD_TYPE_AUTO_COMPLETE = "autocomplete"
2020-05-19 16:11:43 -04:00