e043a5ff63
Merge pull request #38 from sartography/feature/investigators_reference_file
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Adding a new reference file that provides greater details about the i…
2020-05-12 10:01:48 -04:00
e3573bb7df
Really just flailing now as I try to get tests to pass in Jenkins when they all work just fine on my box.
2020-05-12 08:48:26 -04:00
99503fb832
missed a file in the last commit.
2020-05-11 17:42:24 -04:00
b7c11fd893
Merge branch 'master' into feature/investigators_reference_file
2020-05-11 17:36:37 -04:00
420d4af5b5
Merge branch 'master' into feature/investigators_reference_file
2020-05-11 17:10:57 -04:00
182162540a
Merge pull request #42 from sartography/feature/new_script_engine
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Updated to use the latest script engine / evaluation engine that crea…
2020-05-11 17:09:54 -04:00
02f8764056
Updated to use the latest script engine / evaluation engine that creates a single location where all values used in BPMN/DMN are processed. Right now this is a python based interpreter, but we will eventually base this on FEEL expressions.
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The validation process needs to take the api model into account so we catch errors with bad file names.
2020-05-11 17:04:05 -04:00
02118800ca
Prints out LDAP URL
2020-05-11 16:22:42 -04:00
d8f7b6cc9f
Adds dev, demo, and training branches
2020-05-11 12:05:16 -04:00
27d8e0b51b
Merge pull request #41 from sartography/staging
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Staging
2020-05-08 20:37:46 -04:00
b27cad8233
Merge pull request #40 from sartography/testing
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Testing
2020-05-08 18:09:36 -04:00
9cb1a23a28
Merge pull request #39 from sartography/chore/github_branches_to_docker_tags
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Chore/GitHub branches to docker tags
2020-05-07 16:47:45 -04:00
c34000d369
Merge branch 'master' into feature/investigators_reference_file
2020-05-07 16:47:24 -04:00
a1ad11c07d
Cleans up debugging stuff
2020-05-07 14:27:32 -04:00
06f14daa86
Fixes commit substring syntax
2020-05-07 14:24:15 -04:00
fceda2c796
Tries defining commit in deploy script
2020-05-07 14:14:25 -04:00
da7cae51b8
Adding a new reference file that provides greater details about the investigators related to a study.
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Improving the study_info script documentation to provide detailed examples of values returned based on arguments.
Making the tests a little more targetted and less subject to breaking through better mocks.
Allow all tests to pass even when ther protocol builder mock isn't running locally.
Removing the duplication of reference files in tests and static, as this seems silly to me at the moment.
2020-05-07 13:57:24 -04:00
9af91bed8b
Printing out some stuff for debugging
2020-05-07 13:49:17 -04:00
7463664ae0
Merge pull request #37 from sartography/chore/github_branches_to_docker_tags
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Chore/GitHub branches to docker tags
2020-05-07 11:43:04 -04:00
5c510c5a9a
Moves PB_BASE_URL into matrix env var
2020-05-07 10:56:09 -04:00
559494aee2
Fails build if any docker or aws command errors out
2020-05-07 10:47:24 -04:00
9ba00c1320
Moves commit var back up to global
2020-05-07 10:42:19 -04:00
f4e293e8fa
Merge pull request #36 from sartography/chore/github_branches_to_docker_tags
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Builds and deploys Docker image if build passes on testing, staging, …
2020-05-07 10:35:37 -04:00
26251a199f
Moves commit variable into deploy script
2020-05-07 10:25:06 -04:00
827e840103
Builds and deploys Docker image if build passes on testing, staging, or master branches
2020-05-07 10:15:14 -04:00
9afcd753c4
No longer requires task_id
2020-05-06 14:27:28 -04:00
1eb52ed268
Removing duplicate migration.
2020-05-06 13:28:41 -04:00
1571986c0e
I had to give up and live with the idea that we can only render documentation on the current task, not on the previous or next tasks. I think this is ok. If you want to view a task, you need to make it the active task to assure all the parts and pieces are in place.
2020-05-06 13:01:38 -04:00
8ded625c7d
Merge remote-tracking branch 'origin/chore/update_specs' into feature/previous_task
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# Conflicts:
# Pipfile.lock
Assuring that all documents from the xls spreadsheet are loaded when doing validations.
Fixing some failed tests.
2020-05-06 11:46:19 -04:00
07e58e923d
Merge remote-tracking branch 'origin/chore/update_specs' into feature/previous_task
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# Conflicts:
# Pipfile.lock
Assuring that all documents from the xls spreadsheet are loaded when doing validations.
2020-05-06 11:25:50 -04:00
9629b36e92
Setting JSON_SORT_KEYS to false, assuring that Flask does not resort all data returned to the front end.
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Updating Spiff Workflow which has some critical behavioral changes around MultiInstance.
2020-05-06 10:59:49 -04:00
6c36a32411
Adds DSP
2020-05-06 10:37:43 -04:00
a8827d78c4
Fixes typo
2020-05-05 20:49:07 -04:00
4ecb0cb3a3
Updates BPMN files
2020-05-05 16:15:38 -04:00
ce76b0d3e8
Merge branch 'feature/protocol_status' into feature/previous_task
2020-05-04 11:12:12 -04:00
714b5f3be0
Merge branch 'feature/protocol_status' into feature/previous_task
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# Conflicts:
# crc/services/study_service.py
2020-05-04 11:08:36 -04:00
2699f5c65c
Refactor the stats models, and assure they are very correct across all tests with the workflow api.
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I noticed we were saving the workflow every time we loaded it up, rather than only when we were making changes to it. Refactored this to be a little more careful.
Centralized the saving of the workflow into one location in the processor, so we can make sure we update all the details about that workflow every time we save.
The workflow service has a method that will log any task action taken in a consistent way.
The stats models were removed from the API completely. Will wait for a use case for dealing with this later.
2020-05-04 10:57:09 -04:00
28d5727851
Merge branch 'master' into feature/protocol_status
2020-05-01 22:55:59 -04:00
098cf10926
Fixes Jinja code to match new structure of StudyInfo documents
2020-05-01 22:49:52 -04:00
6a96ccffa2
Updates pipenv hashes. Fixes typo in SpiffWorkflow file name
2020-05-01 21:54:01 -04:00
1f5002680a
Initial work on a "Previous" task.
2020-05-01 12:11:39 -04:00
7c743d65ed
Adding tests around parallel which pass great, but ran into a bug down in Spiff that I'm passing back to Kelly with a test in that repo. More coming on this.
2020-04-30 15:39:11 -04:00
bec59a71d7
Deleteing stuff is a damn mess, but this is a little cleaner.
2020-04-29 16:07:39 -04:00
f1f8b91c9c
Refactor the document details scripts. Now there is one script, it returns data in a consistent format, and has all the details required. The script is located in StudyInfo, with the argument documents. Make note that it returns a dictionary of ALL the documents, with a field to mark which ones are required according to the protocol builder. Others may become required if a workflow determines such, in which case the workflow will enforce this, and the document will have a count > 0, and additional details in a list of files within the document. I modified the XLS file to use lower case variable names, because it disturbed me, and we have to reference them frequently. Removed devious "as_object" variable on get_required_docs, so it behaves like the other methods all the time, and returns a dictionary. All the core business logic for finding the documents list now resides in the StudyService.
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Because this changes the endpoint for all existing document details, I've modified all the test and static bpmn files to use the new format.
Shorting up the SponsorsList.xls file makes for slightly faster tests. seems senseless to load 5000 everytime we reset the data.
Tried to test all of this carefully in the test_study_details_documents.py test.
2020-04-29 15:08:11 -04:00
beb86f0453
Adds protocol script to study service
2020-04-29 10:21:24 -04:00
13333fb306
Adding an API endpoint that allows setting the token on the workflow to a specific task.
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Added error checking such that attempting to submit data for a task that is not in the "READY" state throws an error message.
For some reason I'm getting lots of errors in the tests as they try to hit API endpoints they were not hitting before, so adding a number of mocks to some of the study service tests.
2020-04-28 17:25:53 -04:00
5e30e20b67
Updates pipenv lock file
2020-04-28 15:13:39 -04:00
0088364b1d
Merge branch 'master' of github.com:sartography/cr-connect-workflow
2020-04-28 13:48:52 -04:00
3e3a249e3c
Verifying Sub-Process works, and adding a field to expose a hint as to the sub-process in which the task occurs.
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Because the name field is now used to expose workflow/sub-process information on tasks, we can't use it to store the workflow_version, so that is now just stored on the database model. Which is much cleaner and removes a duplication.
2020-04-28 13:48:44 -04:00
663a1a00a8
Fixes file name so it matches workflow spec ID
2020-04-28 11:50:10 -04:00
Dan Funk
Aaron Louie
Aaron Louie