Commit Graph

245 Commits

Author SHA1 Message Date
mike cullerton b0cf74fa3d Merge branch 'dev' into add-by-user-61
# Conflicts:
#	tests/files/test_files_api.py
2021-07-07 10:46:50 -04:00
mike cullerton c11b5cfb29 Add user_uid to api output 2021-07-07 08:18:02 -04:00
mike cullerton 23be257db0 Add user_uid column to file_data table 2021-07-06 17:07:47 -04:00
Dan cafdc4d100 Removing an unneeded modification to the database structure for lookup tables. 2021-07-06 14:02:07 -04:00
Dan 1b1a994360 Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them.
Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
2021-07-06 13:10:20 -04:00
Dan 61ad371680 Clean up the file api so we don't have a bunch of extra stuff in there. Just include the raw data from the document spraedsheet if it is available. 2021-06-22 15:08:08 -04:00
Dan 1f3febe2df Fix the panda warnings, which means we only support xlsx files now.
Include the document details when reutnring a file from the file model.
Improve the validation of file form elements.
2021-06-22 14:58:52 -04:00
Dan 07eb3f9ca8 Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously.
Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
2021-06-18 16:41:55 -04:00
Dan Funk 586a0f2f1a
Merge pull request #325 from sartography/feature/file_refactor
Prefer tasks that share a parent over just the the next available tas…
2021-06-08 11:28:23 -04:00
Dan 59f605c3df Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor. 2021-06-08 08:03:14 -04:00
mike cullerton 2e3d8c7343 Fix for DataStoreSchema missing the file_id column.
The file_id column is a foreign key.
2021-06-01 13:51:10 -04:00
Dan a1bb30e689 Switching from using "default" to "server_default" for all default time settings, and running migrations so that this is set at the database level rather than in python, to hopefully correct some issues with dates being 4 hours in the future. Having a very hard time replicating this issue locally. 2021-05-14 12:28:50 -04:00
Dan Funk 34759a2f3d
Merge branch 'dev' into feature/performance-refactor 2021-05-04 11:30:13 -04:00
Dan Funk d6054a9846
Merge branch 'dev' into 310-task-event-timezone 2021-05-04 11:21:36 -04:00
Dan Funk 77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
Dan a719cf4bf9 When retrieving the study, only update the status of underlying workflows if specifically requested.
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
mike cullerton 24c818bf31 Added study_id to workflow_api 2021-04-29 14:29:21 -04:00
Kelly McDonald c029dad688 Convert some datetime columns to include timezone 2021-04-28 10:00:22 -04:00
Dan Funk 21e95b106d
Merge pull request #295 from sartography/299-document-datastore
Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
Dan 047c68b2b5 Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models 2021-04-26 12:31:22 -04:00
Mike Cullerton 39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204 2021-04-26 10:27:32 -04:00
Kelly McDonald 40ee20ecca Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
Fixes #299
2021-04-26 09:55:28 -04:00
mike cullerton 22432aaf2c study_id is no longer required for task events 2021-04-26 08:36:09 -04:00
mike cullerton c0655c9d03 Added `standalone` column to workflow_spec
Added `user_id` column to workflow
2021-04-26 08:33:55 -04:00
Dan ecff7d20d3 Adding a test for the new endpoint and cleaning up the API documenation 2021-04-21 14:00:19 -04:00
Kelly McDonald e2197ddab9 Changes to support the frontend data pane
fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
mike cullerton d7894f43b6 These changes relate to changes in PB Mock ticket 273, where we removed Q_COMPLETE as a column in the PB Mock Study table. It is now a relationship.
Here, we removed Q_COMPLETE from ProtocolBuilderStudy and ProtocolBuilderStudySchema definitions to accommodate the PB Mock changes.

***This push will need to be coordinated with ticket 273***
2021-04-02 12:01:00 -04:00
Dan b64b52e7cb Assure that we properly return the new status message over the api calls. 2021-03-26 19:47:31 -04:00
Dan 1000b22a3b Don't raise errors on non-ready tasks that calculate a title, the information may not be avaiable yet.
Also Allow autocomplete-num as a valid field property.
2021-03-12 15:40:23 -05:00
Dan 9e758c57d3 Merge branch 'dev' into bug/225_enum_lookup_same_field_name 2021-03-02 14:15:58 -05:00
Kelly McDonald 06dedd8a32 Add short_title to study, change update_study task to use kw arguments and add the short_title to the update_study script 2021-03-02 10:03:53 -05:00
Dan aac3d5c16e Bug #255, this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature. 2021-03-01 14:54:04 -05:00
Kelly McDonald c795dd7aea Merge branch 'dev' into 206-extend-study-access 2021-02-24 12:16:35 -05:00
Kelly McDonald 3dbe39c6fe initial checkin of changes for branch 2021-02-24 12:05:06 -05:00
Dan Funk 349c3d657a
Merge branch 'dev' into 201-changes-to-in-progress 2021-02-22 18:17:59 -05:00
Dan Funk 53fa49e668
Merge pull request #243 from sartography/183-remove-study-approval-code
Remove Approvals per ticket 183
2021-02-22 18:12:02 -05:00
Kelly McDonald 4fa0f9720a Allow frontend to honor 'view as' and fix problem with tests 2021-02-18 11:25:17 -05:00
Kelly McDonald 8c309e9a41 Add user display name to the response for task events 2021-02-18 08:44:44 -05:00
Kelly McDonald 118cf62172 Merge remote-tracking branch 'origin/dev' into STG-181_frontend-ux-model-changes 2021-02-16 10:07:34 -05:00
Kelly McDonald 003bf2f9b9 Remove Approvals per ticket 183 2021-02-16 09:05:29 -05:00
Kelly McDonald da0af14724 Changes to enable front-end changes
Added a human readable name to created user

added last updated task time and name,

added is_review on the workflow which is triggered by a swimlane with a name present.

Notably - it does NOT update or change any of the performance concerns that we were having with this.
2021-02-10 11:58:19 -05:00
mike cullerton 777cfbdecd We now test whether we have a valid StudyModel when getting a study by study model.
We raise an ApiError if the model is None or empty.
2021-02-09 17:37:55 -05:00
Dan b0dc834682 Don't error out on autocomplete_num 2021-01-04 13:41:57 -05:00
mike cullerton ede5df4df5 Studies can now be put on hold in the dashboard. We were overriding the status in StudyModel.update_from_protocol_builder. 2020-12-30 17:49:59 -05:00
Dan 1f9bf72c59 Merge branch 'dev' into bug/navigation 2020-12-14 11:46:44 -05:00
Dan 6bf24cc438 fixing some failing tests related to changes in the underlying spiffworkflow library. 2020-12-14 11:27:38 -05:00
Dan 02ea414b94 Additional fixes to Navigation to allow a nested navigation structure. 2020-12-14 10:07:19 -05:00
Kelly McDonald 0e1aa59fa1 Make a change to make sure that if there is a new file locally that is not present remotely when we pull from the remote, the new local file gets deleted.
Also: add several things to the requirements.txt that should have been there in the first place.
2020-12-08 13:42:01 -05:00
Dan 93b12a8e82 updates using new navigation from spiff workflow's navigation branch, all tests passing. 2020-12-04 17:56:12 -05:00
Kelly McDonald e9979efb0d Add some tests 2020-11-17 09:33:29 -05:00