sartography/cr-connect-workflow
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Author SHA1 Message Date
mike cullerton
70fbd49aab Modified my test workflow so it works better for testing multiple file deletions 2021-04-05 15:12:14 -04:00
mike cullerton
f8428378e2 You can now delete a document or list of documents. 
Also, refactored the fancy bits into `process_document_deletion`
 2021-04-05 15:11:06 -04:00
mike cullerton
33cef2bd2a Added tests for failing conditions 2021-04-05 13:19:29 -04:00
mike cullerton
c6b1fd4e52 Fix for failing tests. Q_COMPLETE is no longer a column in the PB Mock study table. 2021-04-05 13:18:56 -04:00
mike cullerton
61f37ff894 Changed the order of imports so I could debug a failing test 2021-04-05 13:16:43 -04:00
mike cullerton
f0f5cff8d7 Added some checks to do_task to look for valid irb_doc_code and whether or not we found a file 
Added code for do_task_validate
 2021-04-05 13:15:09 -04:00
Dan
4fd8fd13f8 Remove approvals from the study_info script. It was broken, and isn't really possible in this way anymore 2021-04-05 12:52:23 -04:00
Dan
501487b31c Assure we convert to box for validations as well, and test the bloodly snot out of this. 2021-04-05 12:47:50 -04:00
Dan
727aa72e18 Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks. 2021-04-05 11:31:06 -04:00
mike cullerton
9317e49e65 Merge branch 'dev' into delete-uploaded-file-script-283 2021-04-05 10:40:33 -04:00
Kelly McDonald
9f66a938f2 Update pip 2021-04-05 10:19:29 -04:00
mike cullerton
d81497f8cb Test and workflow for new script to delete IRB documents 2021-04-05 08:55:41 -04:00
mike cullerton
0eb6291740 Script to delete an IRB document. Takes an irb_document argument. 
Deletes all files associated with the workflow with that IRB document code
 2021-04-05 08:55:02 -04:00
Dan Funk
7ef43fd477
Merge pull request #279 from sartography/263-optimize-dashboard 
263 optimize dashboard
 2021-04-02 18:54:56 -04:00
Dan
9dca220089 updating package.lock 2021-04-02 17:58:43 -04:00
Dan
dcb4e7b736 fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig. 2021-04-02 17:58:27 -04:00
Dan
3ad3a086ba Merge branch 'dev' into 263-optimize-dashboard 2021-04-02 17:12:02 -04:00
Dan
8edcb4fbc0 Merge remote-tracking branch 'origin/dev' into 263-optimize-dashboard 2021-04-02 17:11:21 -04:00
Dan Funk
c7a07af88b
Merge pull request #276 from sartography/dependabot/pip/lxml-4.6.3 
Bump lxml from 4.6.2 to 4.6.3
 2021-04-02 17:10:53 -04:00
Dan
2100f27976 fixing the api.yml file which was starting to throw errors when updating the libraries. 
Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this.
Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.
 2021-04-02 17:10:05 -04:00
Dan
51b8b4f52c Merge remote-tracking branch 'origin/dev' into dependabot/pip/lxml-4.6.3 2021-04-02 15:11:09 -04:00
Dan
33a87f6c35 Merge branch 'dev' into dependabot/pip/lxml-4.6.3 2021-04-02 14:55:59 -04:00
Dan Funk
6083cacc4a
Merge pull request #268 from sartography/dependabot/pip/deploy/urllib3-1.26.3 
Bump urllib3 from 1.26.2 to 1.26.3 in /deploy
 2021-04-02 14:55:34 -04:00
Dan Funk
ae1e847d73
Merge pull request #278 from sartography/dependabot/pip/deploy/pygments-2.7.4 
Bump pygments from 2.7.2 to 2.7.4 in /deploy
 2021-04-02 14:35:36 -04:00
Dan
cfa8003173 Merge branch 'dev' into dependabot/pip/deploy/urllib3-1.26.3 2021-04-02 14:32:03 -04:00
mike cullerton
d7894f43b6 These changes relate to changes in PB Mock ticket 273, where we removed Q_COMPLETE as a column in the PB Mock Study table. It is now a relationship. 
Here, we removed Q_COMPLETE from ProtocolBuilderStudy and ProtocolBuilderStudySchema definitions to accommodate the PB Mock changes.

***This push will need to be coordinated with ticket 273***
 2021-04-02 12:01:00 -04:00
Kelly McDonald
116bf5e7aa Merge branch 'dev' into 263-optimize-dashboard 
# Conflicts:
#	crc/services/study_service.py
 2021-03-31 10:20:33 -04:00
Kelly McDonald
9084866015 Update error message - it may be that we should spend a bit and see if we can make the Box error 2021-03-31 10:17:08 -04:00
Kelly McDonald
60f5be1aef Check in - pending change from @cullerton 2021-03-30 12:10:49 -04:00
dependabot[bot]
0feee28ba1
Bump pygments from 2.7.2 to 2.7.4 in /deploy 
Bumps [pygments](https://github.com/pygments/pygments) from 2.7.2 to 2.7.4.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.7.2...2.7.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-29 23:39:17 +00:00
Dan Funk
b5d4df595f
Merge pull request #271 from sartography/master-workflow-status-messages-222 
Master workflow status messages 222
 2021-03-26 20:52:24 -04:00
Dan
ded11ddd82 fixing a code smell 2021-03-26 20:25:34 -04:00
Dan
14f3c5b413 Merge branch 'dependabot/pip/lxml-4.6.3' of github.com:sartography/cr-connect-workflow into dependabot/pip/lxml-4.6.3 2021-03-26 20:07:48 -04:00
dependabot[bot]
a28f1f3750
Bump lxml from 4.6.2 to 4.6.3 
Bumps [lxml](https://github.com/lxml/lxml) from 4.6.2 to 4.6.3.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.6.2...lxml-4.6.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-26 23:56:10 +00:00
Dan
00bdeb17c0 Merge remote-tracking branch 'origin/dev' into dependabot/pip/lxml-4.6.3 2021-03-26 19:55:46 -04:00
Dan Funk
8176d7e2b6
Merge pull request #275 from sartography/dependabot/pip/deploy/lxml-4.6.3 
Bump lxml from 4.6.2 to 4.6.3 in /deploy
 2021-03-26 19:50:43 -04:00
Dan Funk
e79e810ae1
Merge pull request #273 from sartography/modify-email-template-215 
Change location of `CR Connect` string. Move it left, closer to the logo
 2021-03-26 19:50:16 -04:00
Dan Funk
123ec50912
Merge pull request #272 from sartography/infinite-validations-262 
Infinite validations 262
 2021-03-26 19:49:42 -04:00
Dan
b64b52e7cb Assure that we properly return the new status message over the api calls. 2021-03-26 19:47:31 -04:00
Dan
ac4877fecf Merge remote-tracking branch 'origin/dev' into master-workflow-status-messages-222 2021-03-26 17:47:57 -04:00
dependabot[bot]
02995da699
Bump lxml from 4.6.2 to 4.6.3 
Bumps [lxml](https://github.com/lxml/lxml) from 4.6.2 to 4.6.3.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.6.2...lxml-4.6.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-26 21:47:31 +00:00
dependabot[bot]
115f9db5d9
Bump lxml from 4.6.2 to 4.6.3 in /deploy 
Bumps [lxml](https://github.com/lxml/lxml) from 4.6.2 to 4.6.3.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.6.2...lxml-4.6.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-26 21:42:47 +00:00
Dan Funk
89077c4e59
Merge pull request #270 from sartography/dependabot/pip/deploy/jinja2-2.11.3 
Bump jinja2 from 2.11.2 to 2.11.3 in /deploy
 2021-03-26 17:42:33 -04:00
Dan Funk
fbd516bdb9
Merge pull request #274 from sartography/dependabot/pip/deploy/pyyaml-5.4 
Bump pyyaml from 5.3.1 to 5.4 in /deploy
 2021-03-26 17:42:20 -04:00
dependabot[bot]
6334b0afa0
Bump pyyaml from 5.3.1 to 5.4 in /deploy 
Bumps [pyyaml](https://github.com/yaml/pyyaml) from 5.3.1 to 5.4.
- [Release notes](https://github.com/yaml/pyyaml/releases)
- [Changelog](https://github.com/yaml/pyyaml/blob/master/CHANGES)
- [Commits](https://github.com/yaml/pyyaml/compare/5.3.1...5.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-25 23:46:10 +00:00
mike cullerton
d9bf2a8a81 Change location of CR Connect string. Move it left, closer to the logo 2021-03-23 13:12:13 -04:00
Kelly McDonald
f1ca44a0e1 Add primitive cache on the fileservice is_review, halves the time of loading the list on the primary dashboard 2021-03-23 10:17:48 -04:00
mike cullerton
3ee8109535 Tests for the changes to master workflow status dictionary 
Test for each valid WorkflowState
Test for all three failure states; not in status, not a dictionary, not a valid state.
 2021-03-22 17:52:14 -04:00
mike cullerton
a201e49d21 The master workflow now generates a dictionary of dictionaries, rather than a dictionary of strings. 
Each entry in status is a dictionary with 'status' and 'message' keys.
We updated the StudyService._update_status_of_workflow_meta method to accommodate the master workflow changes.

Changed the order of some if statements so we move forward while we have good data, and run all the error states at the end.
Added some comments to explain the cascading if statements

We changed the names of private methods to begin with one underscore, so they work in the test environment.
Changed  some internal calls to accommodate the underscore change.
 2021-03-22 17:46:39 -04:00
Nile Walker
a08c6b794f Updated Study Associate Endpoints 2021-03-22 17:30:49 -04:00