alicia pritchett
12a0e26ee1
Include the PI name on the study model
2022-03-18 11:03:06 -04:00
Dan
0510db38f1
Dealing with merge of migrations.
2022-03-12 16:22:45 -05:00
Dan
3189b07446
Merge branch 'dev' into chore/log-changes-661
2022-03-12 16:20:22 -05:00
alicia pritchett
be6a6bcf2e
migration
2022-03-12 15:20:14 -05:00
mike cullerton
04ac0335b8
Migration for the task log changes.
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Also populate the new workflow_spec_id column
2022-03-08 16:47:54 -05:00
mike cullerton
b4e5fac5d9
Migration for new study status
2022-03-03 11:08:02 -05:00
Dan
65e62a72e1
These migrations were not runnable from blank state, so cleared out broken code, so someone can still brining up a system.
2022-02-17 15:04:09 -05:00
Dan
b72ecb8375
Another re-work to fix 619 - and to assure that we aren't rebuilding the lookup tables too frequently.
2022-02-17 11:59:48 -05:00
Dan
eb7760fa55
Adding the migration - very destructive, but required for running the app.
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minor fixes - there is still some weird problems with study id and user id being null that I need to track down, but the issue is sporadic, and hard to track down.
2022-02-10 11:50:31 -05:00
Dan
ff9b2694ae
Fix migrations that depend on removed models.
2022-02-07 11:56:22 -05:00
Dan
5e826ed0cd
Adding the migration.
2022-02-02 16:21:45 -05:00
Dan
a6dd7a695d
The 7225 migration will cause all migrations to fail because it trys to import a service that no longer exists
2022-02-02 16:19:35 -05:00
mike cullerton
d82367ab2a
Move temp_migration_service code into migration 7225d990740e
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Delete test_files_to_filesystem and test_files_from_filesystem--they were only used to give me access to the migration methods
2022-01-26 09:58:46 -05:00
Dan
f3637ee6a0
resolving todos, as they are done, and removing commented out code that is no longer in use.
2022-01-25 16:37:17 -05:00
Dan
f815add699
1. Add a default directory for the location of SYNC files.
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2. Added a last_updated column to the lookup table
3. The Lookup service now uses the above, and compares it to the actual file date, we can then rebuild the lookup if needed.
4. That 755 migration loads up the models, so when you change the models, the migration starts to fail. Not really sure what to do here, but modify the migration while we are in process.
2022-01-20 13:05:58 -05:00
mike cullerton
31653ec85a
delete unused migration
2022-01-19 15:52:36 -05:00
mike cullerton
d83f28e1a7
Pushed so Dan can play
2022-01-18 15:55:49 -05:00
mike cullerton
68ac056457
Merge branch 'dev' into files-to-filesystem-572
2022-01-18 08:18:14 -05:00
mike cullerton
6e0bf65093
Prepping for merging current dev.
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Will need to change the down revision, and fix the migration
2022-01-18 08:17:36 -05:00
Dan
e67a1554ea
Always but always but ALWAYS, use server_default=func.now() when setting up a datetime field we autopopulate.
2022-01-12 12:33:59 -05:00
Dan
7176452fe3
forgot the migration, also fixing an error in the TaskLogQuerySchema.
2022-01-10 13:26:16 -05:00
mike cullerton
d60ebf9a54
First attempt at changes to LookupFile table
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Want to migrate data and modify table
Have to get session through bind
2022-01-06 14:28:20 -05:00
mike cullerton
86a6039dc8
*** WIP ***
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**Many** tests are failing!
Committing so I can merge dev into this branch
2022-01-06 11:46:54 -05:00
mike cullerton
a44300bd96
More upgrade code - delete associated data for each processed file
2022-01-04 07:24:21 -05:00
mike cullerton
5a46d56158
deleting the file_data records for the processed files
2021-12-17 12:57:28 -05:00
mike cullerton
797f8a2cfc
Added another migration to remove slashes from names of files, workflow_specs, and workflow_spec_categories
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Changed the order to put it before the existing one.
2021-12-17 11:48:24 -05:00
mike cullerton
5c90ce01a6
*** WIP ***
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Temp services `ToFilesystemService` and `FromFilesystemService` for migrating files To and From the filesystem - Not sure where these classes will end up
Tests to call the two services.
upgrade method in migration that writes workflow spec files and metadata to filesystem
2021-12-16 14:22:37 -05:00
mike cullerton
338352017b
*** WIP ***
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Moving files to the filesystem
Tools for reading/writing metadata for categories and specs
2021-12-16 08:41:49 -05:00
mike cullerton
acbb8898e4
Merge branch 'more-study-statuses-562' into waiting-workflow-errors-566
2021-12-10 16:52:07 -05:00
mike cullerton
bf21f78085
Seeded progress_status column when status is in_progress
2021-12-10 16:27:17 -05:00
mike cullerton
6d09aa1817
We moved the new statuses to a new column and created a separate enum class for them.
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They really are sub_statuses of the in_progress status
2021-12-10 15:57:02 -05:00
mike cullerton
61975093f9
Renamed some files to include the word progress
2021-12-10 15:47:34 -05:00
mike cullerton
52baf25459
In WorkflowService.do_waiting, if a workflow causes an exception, change its status from waiting to erroring so we don't continue to call it in do_waiting.
2021-12-09 15:33:39 -05:00
mike cullerton
ac82187bac
We need a migration for the new study statuses
2021-12-09 13:32:21 -05:00
mike cullerton
b0c479420d
New task_log model with schema, and migration
2021-10-27 12:19:09 -04:00
mike cullerton
f1dbda7f95
Fix timestamp field to use (UTC) timezone
2021-10-13 11:46:57 -04:00
mike cullerton
699fc7daac
Change column in email table from workflow_id to workflow_spec_id
2021-10-12 13:42:11 -04:00
mike cullerton
cdcb3a8bd0
Fixed revision conflict
2021-10-07 12:39:07 -04:00
mike cullerton
24932072dc
Merge branch 'dev' into email-data-script-487
2021-10-07 12:30:13 -04:00
mike cullerton
6f93554e7e
Migration script for new email columns
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!!!This will need to be merged with another migration happening in another ticket concurrently!!!
2021-10-07 09:23:58 -04:00
Dan
4068fbbc08
Migration to fix the names of the workflow specs.
2021-10-06 15:27:26 -04:00
mike cullerton
fcf538ca92
remove name column from workflow_spec and workflow_spec_category
2021-10-05 13:10:36 -04:00
Dan
50dae23c42
Finally have alembic configured so we can see orrors when things aren't working!
2021-10-01 13:00:41 -04:00
alicia pritchett
d5d4496cd0
Admin flag on category + migration + updated test
2021-09-29 16:53:59 -04:00
mike cullerton
8b8cfde6cb
Add short_name and proposal_name to the study model
2021-09-17 11:53:45 -04:00
mike cullerton
3d7dadc319
Model changes and revision file for task_spec column to file and data_store models
2021-08-26 10:36:10 -04:00
mike cullerton
fcebc6ac2b
Revision file for DB changes
2021-08-16 13:02:12 -04:00
Kelly McDonald
25319a0e6a
Make changes to alembic process - fix test for new API
2021-08-02 08:59:24 -04:00
Kelly McDonald
d7c66fb055
fix revisions
2021-07-29 09:41:39 -04:00
Kelly McDonald
41ad7935f8
Merge branch 'dev' into 367-Call-Activity
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# Conflicts:
# Pipfile.lock
2021-07-29 09:28:21 -04:00
