80ff8a6212
Allows us to delete a study even if there are emails, and associated study users connected to that study.
2021-03-09 13:31:26 -05:00
576aebab19
Sometimes a workflow can be completely broken and unloadable. For instance, it starts off with a engine step / script task that will not execute. So the failure happens the second it is processed. When calling reset on a workflow, we should catch the failure, and reset the workflow, so we aren't trapped in an unrecoverable state.
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To do so, I changed the WorkflowProcessor's reset method to be static, it will try to instantiate the current workflow and execute a cancel_notify event, but if that fails, it will continue and always return a new workflow processor using the latest spec.
2021-03-09 11:52:55 -05:00
36dcc58705
Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev
2021-03-08 14:00:14 -05:00
291216e081
Fixing a bug that prevented proper evaluation of a enum field where the default value was null or empty.
2021-03-08 14:00:03 -05:00
f883eb2bbe
We now include field.id in the ApiError message for hidden and default validation. (The field must have a default value or value expression)
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While working on this ticket I found a logic error in the test. I expected both default_value and value_expression. It turns out the default_value is always there, it's just null if we don't set it.
Modified the existing test for hidden and required, and added tests to make sure my passing logic is now correct.
2021-03-04 10:42:13 -05:00
9e758c57d3
Merge branch 'dev' into bug/225_enum_lookup_same_field_name
2021-03-02 14:15:58 -05:00
572eb3457a
Merge pull request #252 from sartography/customer-error-messages-192
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Customer error messages 192
2021-03-02 13:45:38 -05:00
c8f5a44050
adding a warning in the logger so we can see when expensive calls are made to rebuild searches for enumerations. But all looks good.
2021-03-02 12:21:51 -05:00
06dedd8a32
Add short_title to study, change update_study task to use kw arguments and add the short_title to the update_study script
2021-03-02 10:03:53 -05:00
9a2ffb98ad
Customer Error is in a place that we can try it out on testing.
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So far, there are two known errors.
- Missing condition type (Ticket 178)
- Invalid property value in extensions tab for display_name (No ticket for this error)
We now have the option of using regular expressions to pull task_id, etc. from an error to pass back to the user in the hint.
2021-03-01 16:41:55 -05:00
aac3d5c16e
Bug #255 , this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature.
2021-03-01 14:54:04 -05:00
9d804c36d5
Merge branch 'dev' into customer-error-messages-192.
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Needed some sql changes from dev
2021-03-01 10:29:10 -05:00
0b08a95e25
Add test and make sure that the API endpoint does the right thing when we switch users - checks both associated with access and associated with no access
2021-02-25 12:20:43 -05:00
f3414e22c1
use the associated table to grant access to users who have been designated to have access to the study, not just the study owner.
2021-02-25 11:08:06 -05:00
f592a8a0b0
Added a few more tests - I think I need to test one more script endpoint
2021-02-25 09:07:46 -05:00
9bd3aa8dcb
service and scripts with working test - still needs a few more tests to try out, but should work to get Mike going
2021-02-24 12:55:23 -05:00
c795dd7aea
Merge branch 'dev' into 206-extend-study-access
2021-02-24 12:16:35 -05:00
3dbe39c6fe
initial checkin of changes for branch
2021-02-24 12:05:06 -05:00
f937ac3ce9
Getting some thoughts down for the extension property error. This might force us to use regexes for the error service.
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Committing so I can work on another branch.
2021-02-24 10:56:25 -05:00
349c3d657a
Merge branch 'dev' into 201-changes-to-in-progress
2021-02-22 18:17:59 -05:00
53fa49e668
Merge pull request #243 from sartography/183-remove-study-approval-code
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Remove Approvals per ticket 183
2021-02-22 18:12:02 -05:00
3b06795c4c
File cleanup for readability. Removed some commented code.
2021-02-19 14:49:53 -05:00
f0a921d46d
Merge pull request #242 from sartography/allow-period-in-field-id-199
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Allow period in field id 199
2021-02-17 15:08:53 -05:00
93f29e86d8
Merge branch 'dev' into STG-181_frontend-ux-model-changes
2021-02-17 07:49:05 -05:00
ff8a44a7b1
Make sure we always have a current user, even if the very first task is a script task.
2021-02-16 12:42:59 -05:00
e54a6956df
Make a change in the case that we have no task_events at all.
2021-02-16 11:10:40 -05:00
118cf62172
Merge remote-tracking branch 'origin/dev' into STG-181_frontend-ux-model-changes
2021-02-16 10:07:34 -05:00
003bf2f9b9
Remove Approvals per ticket 183
2021-02-16 09:05:29 -05:00
3b1dc70558
Add comment for later ticket
2021-02-16 08:44:41 -05:00
ed6218028c
We now allow periods in field ids.
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Also, added task_id and task_name to the ApiError for missing default value on hidden and required fields
2021-02-15 16:27:56 -05:00
39eb5c5c21
This is a decent beginning framework for customer error messages.
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It is not complete, but is in a state where we can start to interact with the front end.
Two tests are failing.
Committing so I can work on an error for Alex.
2021-02-12 14:18:42 -05:00
35773ebc29
Merge pull request #240 from sartography/weird-email-error
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The email script was failing validation because of missing parameters…
2021-02-12 09:31:52 -05:00
d8bd203139
The email script was failing validation because of missing parameters in scripts.email.do_task_validate_only.
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I added a test in tests.test_email_script to make sure we get the default email_address.
I also found and fixed a bug in workflow_service.populate_form_with_random_data where we would overwrite default_values with random text because of a missing continue.
(We don't want to continue if we have repeating fields though.)
2021-02-11 15:36:12 -05:00
fe4e737596
Merge pull request #238 from sartography/value-expression-failing-shield-test-194
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We now allow value_expression to evaluate to an empty string ("") so …
2021-02-11 11:25:09 -05:00
df25b83958
Merge pull request #235 from sartography/index-error-for-enums-186
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Index error for enums 186
2021-02-11 11:21:50 -05:00
10b9c7b892
Merge pull request #234 from sartography/hidden-and-required-fields-185
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Hidden and required fields 185
2021-02-11 11:20:35 -05:00
f7337f4e54
Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev
2021-02-11 11:17:56 -05:00
2ada9f6f42
Private Ldap settings
2021-02-11 11:17:21 -05:00
39e874504f
We now allow value_expression to evaluate to an empty string ("") so that we *do not* set a default value for enums in some cases.
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This was causing an error because "" was not an option for the enum.
2021-02-10 14:35:58 -05:00
8a2a8b1443
Still not in working order. Committing to work on another ticket.
2021-02-10 12:28:59 -05:00
da0af14724
Changes to enable front-end changes
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Added a human readable name to created user
added last updated task time and name,
added is_review on the workflow which is triggered by a swimlane with a name present.
Notably - it does NOT update or change any of the performance concerns that we were having with this.
2021-02-10 11:58:19 -05:00
b42b843f7d
It was possible for an enum field lookup to return an empty list. This meant there were no options for the list.
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We now test for this and raise an error.
2021-02-08 15:10:53 -05:00
e87e7b5b8b
Form fields that can be hidden and required must now have a default value or value_expression.
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Also, if a field is hidden but not required, it should not produce a value.
2021-02-08 10:18:41 -05:00
fa34bee18a
First commit for cleaning up error messages for customers.
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This is *not* in a working state.
Committing this so I can work on another ticket.
2021-02-04 11:23:05 -05:00
329146237e
Merge pull request #232 from sartography/boolean-default-values-175
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Boolean default values 175
2021-02-03 16:34:54 -05:00
b090e31e00
This fixes 2 issues with setting boolean defaults
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- If the default was False, we failed an early test and returned None. We now only return None if default is None
- We have a better test for deciding if the default value we return should be True or False. We used to return True if the value was the string 'false'.
2021-02-03 09:50:16 -05:00
7e76639cf3
When a study is put on hold, we now reset workflows and call any pending cancel_notify events.
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In api.study.update_study we test the study status and call the new WorkflowService method process_workflows_for_cancels.
In services.workflow_service we added the new method process_workflows_for_cancels. It loops through workflows for a study, and resets them if they are in progress.
In services.workflow_processor, we changed the reset method to be an instance method so we can call self.cancel_notify.
In tests.test_lookup_service we changed the call to WorkflowProcessor.reset to reflect the change from class method to instance method
2021-01-29 14:05:07 -05:00
cccb722e07
Merge pull request #226 from sartography/enum_default_value_expression_162
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Enum default value expression 162
2021-01-27 10:43:46 -05:00
81e55b6055
Cleaning up my smell. A task should only have default_value *or* value_expresion, not both.
2021-01-27 10:21:13 -05:00
98f946c119
Merge pull request #227 from sartography/missing_form_key_163
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Missing form key 163
2021-01-27 09:42:46 -05:00
b71fd93dd4
We now make sure that forms have a form key. Ticket 163
2021-01-22 12:14:17 -05:00
00d9276483
In spiff_task_to_api_task, when looping through fields, if the field doesn't have a value, we now try to set it with the default value
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In test_spec, we now check for FIELD_PROP_VALUE_EXPRESSION when setting default values
2021-01-22 10:00:28 -05:00
5921ce9f10
Merge branch 'dev' into 152-workflow-spec-pull
2021-01-21 12:30:43 -05:00
5b13195182
Merge pull request #224 from sartography/restart-with-no-data-99
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Restart with no data 99
2021-01-20 17:22:18 -05:00
41dac33039
Removed two tests around soft_reset that are no longer required.
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Reset should construct the workflow_processor, thus completing the reset process.
Removed the spec argument from init, as it is never used anywhere.
2021-01-20 13:24:53 -05:00
039a1dcd79
WorkflowProcessor code for new restart_workflow api endpoint. WorkflowProcessor.reset will clear workflow_model.bpmn_workflow_json, and if clear_data is True will clear form data.
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WorkflowProcessor.__init__ is mostly unchanged.
2021-01-19 15:14:36 -05:00
6a9e6d3570
Restart workflow without form data. Committing so Dan can check it out
2021-01-14 15:32:14 -05:00
f282a9ef73
Make sure that top_level_workflow is transferred over, also include reference files in the list of files to sync
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We may want to revisit this because I used a 'Magic' workflow_ref_id of 'REFERENCE_FILES' as a special case so I could re-use most of what I already had. This works well, but we may want to structure it different.
2021-01-11 09:21:44 -05:00
336c093bf8
Catch errors when building enumeration lists.
2021-01-08 15:15:24 -05:00
26655b26d3
merging in dev, and fixing a failing test from dev.
2021-01-08 14:42:13 -05:00
9118517995
Merge pull request #220 from sartography/prevent-duplicate-template-upload-111
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Users cannot upload a workflow_spec_file that already exists. We rais…
2021-01-08 13:55:19 -05:00
d274813ae5
We now check form field IDs so they play well with Python and Javascript.
2021-01-07 11:10:31 -05:00
c9a4a9685f
Users cannot upload a workflow_spec_file that already exists. We raise an error that is displayed on the fron end.
2021-01-04 15:47:45 -05:00
0ae4448fbe
Fixed ApiError call. Now includes task_id and task_name.
2021-01-04 13:48:34 -05:00
e5a38874f6
A hard or soft reset should also cause a 'cancel_notify' which will kick off any CANCEL events. If this happens during
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a hard or soft reset, and an error is thrown trying to fulfil a cancel event, the reset should still fire.
Sending emails still had a number of issues correctly parsing it's arguments. This is corrected.
2020-12-29 18:05:13 -05:00
c288a8a2bc
Merge branch 'dev' into check-field-type#143
2020-12-29 11:11:43 -05:00
7938ac8eed
We now assure each form field has a field type. Modified populate_form_with_random_data, added check at beginning of form field loop.
2020-12-28 18:02:16 -05:00
6cfce839c1
Validation now assures that we won't encounter errors when generating navigation lists.
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Fixing workflow sync paths that were incorrect.
Repairing a suddenly failing test in files, that just don't make no sense.
Bumping spiffworkflow that contains a fix for issue #155
2020-12-28 17:33:38 -05:00
1f9bf72c59
Merge branch 'dev' into bug/navigation
2020-12-14 11:46:44 -05:00
4268d0f482
Merge pull request #208 from sartography/152-workflow-spec-pull
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152 workflow spec pull
2020-12-14 11:35:06 -05:00
bcb78de225
Merge branch 'dev' into bug/navigation
2020-12-14 11:33:51 -05:00
e54404e424
Merge pull request #205 from sartography/test-email-script
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Test email script
2020-12-14 11:28:14 -05:00
b62a9c7074
Merge remote-tracking branch 'origin/dev' into bug/navigation
2020-12-14 10:40:21 -05:00
fd4b881416
upgrading the pip libraries.
2020-12-14 10:30:10 -05:00
02ea414b94
Additional fixes to Navigation to allow a nested navigation structure.
2020-12-14 10:07:19 -05:00
7defc2b02f
Tests for uid in logs. Currently we test for uid in a response. This covers ApiError.
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Currently, we don't have a test for Sentry. Unsure how to do this.
Also added a script, service and test workflow to help. (Also to learn about adding a script and service.)
2020-12-11 17:47:53 -05:00
adc4dc4453
redid the api a bit so that nothing was using open security - added a new endpoint for getting a workflow spec that uses the alternate API_TOKEN security and leave the original endpoint as it was.
2020-12-11 12:03:41 -05:00
55e6f5b753
refactored calls into a service - forgot to add actual service
2020-12-11 11:42:00 -05:00
93b12a8e82
updates using new navigation from spiff workflow's navigation branch, all tests passing.
2020-12-04 17:56:12 -05:00
e15130e09c
Merge pull request #203 from sartography/151-data-store-exclusive-branch-expression
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Added the ability to use the custom functions within a decision/flow …
2020-12-01 14:44:27 -05:00
94662c560e
Added the ability to use the custom functions within a decision/flow coming off of an exclusive join
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Altered previous test to test this feature
2020-12-01 09:13:12 -05:00
73e01b347b
Ticket #105 . Verify End Event Documentation. Added explicit call to _process_documentation at end of crc.services.workflow_service.test_spec for the end event
2020-11-24 16:51:18 -05:00
1815a4b657
Merge branch '117-save-restore' into dev
2020-11-05 08:24:18 -05:00
2931f45187
Add 'sponsors' to study_info call
2020-11-04 14:34:10 -05:00
849a4e9f94
Made changes to how soft_reset works so it is backward compatible - essentially, we use the file if we are doing a soft-reset or a new workflow. NB, this may actually still have problems if we have a workflow with P/SMI and we do a soft-reset on it even if there are no structural changes.
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Also, change how default_value is interpreted, looking at the object attribute rather than the properties list.
2020-10-09 11:00:33 -04:00
8b23cdc05c
commit changes before switching branches
2020-10-09 08:46:14 -04:00
b2aede2b8d
Glob on windows seems to return directories where in linux it does not, so now assuring we don't try to add files from the sub-directory.
2020-10-05 17:35:35 -04:00
b544334f45
1. Updating Personnel BPMN diagram to debug some issues.
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2. Disabling the token timeout for now, to see if this corrects the issues Alex is having with lost work.
3. Raising more thoughtful error messages for unknown lookup options.
4. Providing better validation of default values and injecting the correct value for defaults related to enum lists of all types.
5. Bumping Spiffworkflow library which contains some better error messages and checks.
2020-09-01 15:58:50 -04:00
1052dff549
Merge remote-tracking branch 'origin/dev' into feature/python_eval
2020-08-27 14:33:16 -04:00
53d09303d8
Validating that field properties are valid - they must exist as constants on the Task model.
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Making all the lookup field names consistent.
Fixing the lookup service which was failing at times trying to find the correct field to use for building the lookup table.
Updating validation to check for additional fields and properties.
When connexion level errors occur, wrapping it in an API Error to be consistent.
2020-08-27 14:00:14 -04:00
d31fd47837
Merge branch 'dev' into feature/python_eval
2020-08-25 11:08:42 -04:00
5be35e8bab
Adding a study sponsors script to return details about study sponsors
2020-08-25 10:30:46 -04:00
4dc98a6b6b
Injects current user into task data.
2020-08-21 13:34:37 -04:00
7f60a19d55
Merge pull request #189 from sartography/feature/documents_publishing
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Update github routines to use branches
2020-08-17 15:52:47 -04:00
35b1b20960
Merge remote-tracking branch 'origin/dev' into feature/documents_publishing
2020-08-17 15:19:24 -04:00
dfaffc22b5
Merge remote-tracking branch 'origin/dev' into fix/returning_failed_name_message
2020-08-17 15:18:17 -04:00
d4c5e297cc
Merge remote-tracking branch 'origin/dev' into fix/delete_workflow_endpoint
2020-08-17 15:09:11 -04:00
c09441d019
Merge branch 'dev' into fix/delete_workflow_endpoint
2020-08-17 15:07:58 -04:00
85ad477b2b
Some minor cleanup on the study status and automatic events. I wanted to avoid having one database model automatically generating other database models as a side effect. The study service now has full responsiblity to recording study events.
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To help in running tests, adding __init__.py methods to all the test directories.
2020-08-17 14:56:00 -04:00
2bd906e96d
Update github routines to use branches
2020-08-14 11:04:22 -06:00
304ca77e3e
Fixing exception within NameError handler
2020-08-14 09:01:15 -06:00
369fe4bb35
Automatic events refactoring
2020-08-14 08:36:46 -06:00
9a5c1d7cfb
I may have finally wrapped my head around full text search in python. Now properly using an index based on simple rather than english dictionary which has far fewer stop words and stemming processes and plays much better to the type ahead search we are trying to provide.
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Stop words are no longer excluded, so "other" is a valid search and gets a result.
2020-08-13 18:13:41 -04:00
9a31d591ae
Adds user uid and cascades study event in study model. Fixes migration to properly downgrade enums.
2020-08-12 10:13:23 -04:00
79c14ad23c
Unlinking file from workflow instead of trying to delete it
2020-08-10 22:23:20 -06:00
3cfcd74a6a
Just finding a few more edge cases, all tests should pass now.
2020-08-10 15:16:53 -04:00
b53d033400
Cleaning up the delete workflow method in study service so we don't try to delete the same thing more than once)
2020-08-10 14:56:33 -04:00
56b161a234
Fixing the failing tests by passing in workflow.id rather than workflow to the delete workflow endpoint
2020-08-10 13:51:05 -04:00
d3462d2e15
Deleting all dependencies for a workflow
2020-08-10 07:42:56 -06:00
a561a5cddc
Adjusting study events attribute
2020-08-08 18:25:01 -06:00
c25536dcca
Makes Sonar happy.
2020-08-04 16:42:35 -04:00
2846bf9451
Fleshes out fake PB response, so workflows that pull from PB actually trigger validation errors
2020-08-04 15:50:29 -04:00
b4595b345a
Raises ApiError for 'display_name' extension property exception
2020-08-04 13:59:50 -04:00
50b207307a
Merge branch 'dev' into feature/update_study_status_latest
2020-07-31 14:26:24 -06:00
5d23223e51
New study status update
2020-07-30 21:03:11 -06:00
73699e66bd
Merge branch 'dev' into feature/admin_impersonations
2020-07-30 17:36:20 -04:00
9704cbcb26
Modifications to the ldap scripts to bring them back in line with what Kelly is doing with the evaluation process.
2020-07-30 13:35:20 -04:00
f8944da31f
Merge branch 'dev' into feature/admin_impersonations
2020-07-30 13:01:46 -04:00
faba0f55ab
Adds AdminSession model and refactors impersonation methods to use it.
2020-07-30 12:40:53 -04:00
a6ec0c92c7
Merge remote-tracking branch 'origin/dev' into cr-connect-106-augment-eval-methods
2020-07-30 11:38:47 -04:00
aa0f24bd33
Fully deletes users from g in test tearDown
2020-07-30 10:40:06 -04:00
31982f81ae
Merge branch 'dev' into feature/documents_publishing
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# Conflicts:
# Pipfile.lock
2020-07-30 10:17:08 -04:00
1b0ebecbf4
Uses Flask session to store impersonation state.
2020-07-30 10:17:02 -04:00
d301e9e6fa
Adds list_users endpoint. Adds admin impersonate uid parameter to user endpoint. Adds some utility methods to user service. Refactors authentication tests.
2020-07-29 22:47:47 -04:00
f897ee3aea
Merge branch 'feature/approvals_dashboard_prototype' into feature/admin_impersonations
2020-07-29 10:32:46 -04:00
0ea4c13d09
Convert protocol builder status to always be in lower case in order to better match the front end. And also fixing an issue with the multi_instance that is oddly broken suddenly, and I don't know why.
2020-07-28 17:16:48 -04:00
4d11fc04a0
dropping the "read_only" flag in favor of a "do_engine_steps" flag, which more clearly defines what is happening.
2020-07-28 13:51:29 -04:00
f15626033d
Allow the workflow to be requested without making changes to the workflow - requires that you specify a read_only flag of true, otherwise it assumes that you want a fully prepared workflow with the next ready task set to run.
2020-07-28 13:33:38 -04:00
d617af8565
All tests are passing - may need to refactor a bit, / remove comments
2020-07-28 11:02:49 -04:00
300026cbc8
Expanding the task events endpoint to accept workflow and study ids as additional filters.
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Removing events from the study endpoint, too noisy.
2020-07-28 10:16:48 -04:00
0cb480801b
Provide event data on the Study api endpoint.
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Speed up the tests a little, because that got out of hand. Need to dig into what is causing this problem.
2020-07-27 17:05:01 -04:00
452f2c3723
Building out a user service for getting the current user, it will provide a number of functions, one of which will allow administrative users to impersonate other users in some circumstances (but will assure that we log events correctly when an impersonation occures)
2020-07-27 14:38:57 -04:00
70ad3872a7
Fix several bugs, most had an issue with the bpmn document
2020-07-27 12:02:34 -04:00
a124e13c6a
Replace all legacy style calls with new calls.
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Still having issues where we try to eval an empty definition, not quite sure why there is a difference from what we had before. I may need to revert some of it and determine what is going on.
2020-07-24 14:33:24 -04:00
f5ab283538
Test of adding in the ability of augmenting the workflow to include internal scripts like StudyInfo
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This is the first waypoint on a larger effort to make all of the 'special scripts' that currently require a shebang to be just another python function.
2020-07-24 12:08:46 -04:00
5ec5fcb4e4
Correcting an issue with the Navigation where it did not correctly handle looking back to a previous task within the workflow.
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In some cases the session was not getting committed, leaving rogue assignments outstanding for a workflow.
2020-07-23 12:00:24 -04:00
855f5544e5
Adds enrollment_date to study model
2020-07-22 09:35:08 -04:00
6caf44544c
Merge branch 'dev' into cr-connect-92-scripting-enhancements
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# Conflicts:
# crc/static/bpmn/ind_supplement/ind_supplement.bpmn
# tests/workflow/test_workflow_service.py
2020-07-20 13:01:23 -04:00
dd0f984347
Drop backwards compatibility of scripts. While this will cause some initial pain, it's less confusing and error prone, and we are still in the development phase of the project. Were this going straight to production we would likely want to keep this backwards compatibility.
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Don't parse on spaces if this is python code, so we avoid any errors in processing - spaces should be valid.
2020-07-20 12:26:34 -04:00
b85869905b
Merge branch 'cr-connect-92-scripting-enhancements' of github.com:sartography/cr-connect-workflow into cr-connect-92-scripting-enhancements
2020-07-20 11:40:10 -04:00
06430550c8
Dropping the RRT-Data-Fix, it should have come out already, but had a failing test, so pulling it out now rather than delve into what is going wrong with obsolete code.
2020-07-20 11:39:50 -04:00
f415f22ccb
Add warning message when we fail due to syntax error and then we try to look up the class as a backup
2020-07-20 10:12:15 -04:00
fcb772c900
Reporting to Sentry all captured exceptions and enabling multiple environments
2020-07-19 16:40:33 -06:00
73400ed6c7
Adding proper tests for files publishing
2020-07-17 16:59:25 -06:00
e82532aad8
Updates IND workflow spec. Fixes validation process to return lookups for enum values.
2020-07-17 11:51:21 -04:00
de54b63e20
Process scripts with no shebang (#!) as a regular python script. If there is a shebang, we look up the class as we did before.
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I've also made it so that it falls back if we accidentally forget to add a shebang to a study as this would be a breaking change.
With the fallback feature, it should work with unmodified bpmn documents.
2020-07-17 10:56:04 -04:00
ab5771024e
Check in for sanity check
2020-07-17 09:24:53 -04:00
d67105332f
Merge branch 'dev' into feature/lanes_and_roles
2020-07-16 14:00:53 -04:00
d0279a11e5
Fixes failing unit test
2020-07-15 17:44:46 -04:00
08fba1a4dc
Merge branch 'dev' into feature/dynamic_enum_list
2020-07-15 13:09:02 -04:00
c7662315aa
Assure that any errors that occur during the do_engine_steps is correctly captured and returned to the end user or configurator with enough information for them to act on.
2020-07-15 11:16:35 -04:00
fa7608053a
fixing a failed test.
2020-07-14 22:23:54 -04:00
d85ca1ce51
Whenever a workflow is loaded or updated, add events to the TaskEvent table with assignments for the next set of ready tasks, along with who should complete those tasks.
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Add the lane information to the Task model.
Drop the foreign key constraint on the user_uid in the task log, as we might create tasks for users before they ever log into the system.
Add a new endpoint to the API called task events. It should be possible to query this and get a list of all tasks that need a users attention.
The task events returned include detailed information about the workflow and study as sub-models
Rename all the actions in event log to things that are easier to pass over the api as arguments, make this backwards compatible, updating existing names in the database via the migration.
Throughly test the navigation and task details as control of the workflow is passed between two lanes.
2020-07-14 22:16:44 -04:00
d71ff80eac
Adds end and start events
2020-07-14 13:42:52 -04:00
9077ff3ebf
It is not possible to use task_data for an auto-complete field. It's too expensive an operation to provide that feature on the backend, and the data already fully resides on the front end anyway. Task-data can be used to populate enum fields if needed, so it can populate dropdowns, radios and checkboxes, just not auto-complete.
2020-07-14 11:38:48 -04:00
a48322ef6a
Partial work on CR Connect Roles.
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Adding checks in the API to assure the correct person is completeing a task based on the task's lane.
Adding lane to the Navigation item.
Adding a check to assure that unique user ids can be identified using task.data
Added some additional ldap entries to make testing and development easier.
Removed a big chunk of duplicate code from task_tests_api
Modified some of the helper functions to make it easier to test as specific users.
Added some additional bpmn models to the tests for testing lanes and roles.
2020-07-14 10:29:25 -04:00
463660f185
Merge branch 'dev' into feature/dynamic_enum_list
2020-07-13 17:47:56 -04:00
07066b8a16
Looks up enum options from task data
2020-07-13 17:46:28 -04:00
9e29a43785
Correct for a race condition where multiple lookup tables are built for the same field and workflow specification, causing it to appear that the models are not updating correctly.
2020-07-13 12:45:51 -04:00
b7920989ed
WIP: Adds Camunda property for retrieving enum field options from task data.
2020-07-10 14:48:38 -04:00
7f0b35ff27
Merge branch 'dev' into feature/enum_lookup_data
2020-07-10 10:27:51 -04:00
ff7c30b879
Merge pull request #138 from sartography/fix/cleanup_todos
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Cleanup pending TODOs
2020-07-10 08:26:47 -04:00
6a79fb3581
There may be multiple investigators of the same type that come back from the protocol builder, adding some tests and additional code to handle this, but still keep the list flat, currently appends a number to the investigator type when there is more than one.
2020-07-07 17:16:33 -04:00
64f9bd2ca7
Tiny leftover
2020-07-07 08:38:33 -06:00
b4e127b3b7
Cleaning properly previous versions
2020-07-07 08:32:41 -06:00
a302208890
Updating test for study with approvals
2020-07-07 08:32:41 -06:00
c7b864f9c7
Cleaning up old notes
2020-07-07 08:32:20 -06:00
517cd8fc91
Merge branch 'dev' into feature/enum_lookup_data
2020-07-06 16:31:19 -04:00
bb4000ff6d
Don't attept to load up the workflows for abandoned studies.
2020-07-06 16:01:43 -04:00
8a66128189
Bug fixes after bumping the version of Spiffworlflow to the latest - which has fixes for sequential multi-instance.
2020-07-06 15:34:24 -04:00
419c05e46c
Merge branch 'dev' into fix/more-info-in-exceptions
2020-07-06 12:51:24 -04:00
a5cef8775e
* Modifying the StudyInfo script to return both "investigators" and "roles", the investigators argument will return only the current active investigators according to the protocol builder. The "roles" argument returns all possible roles - it is what "investigators" use to be.
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* The Task.title returned to the front end will now attempt to process the "display_name" property for dot-notation syntax, making it possible to use this for multi-instance tasks,
but will work in all cases where we want he title to change based on values in the data model.
* Fixing a bug the test_study_api where it wasn't updated when we made recent changes to the different states of a study.
*
2020-07-06 12:09:21 -04:00
1d9fef380a
Merge branch 'fix/more-info-in-exceptions' into feature/enum_lookup_data
2020-07-03 14:22:11 -04:00
f344fe60c0
WIP: Adds enum field lookup option data
2020-07-03 12:20:10 -04:00
817333f26e
Adding proper exception information
2020-07-02 16:10:33 -06:00
84973d2351
resolving comments from pull request.
2020-06-30 12:24:48 -04:00
93bf46354b
A last minute change to make the API a little clearer and cleaner broke some tests.
2020-06-30 11:12:28 -04:00
f183e12fe5
Provides some basic tools for getting additional information about a lookup field.
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Adds an optional 'value' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up if double spaces were used when performing a search.
2020-06-30 10:34:16 -04:00
d3ce1af1ce
Provides some basic tools for getting additional information about a lookup field.
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Adds an optional 'id' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up in double spaces were used when performing a search.
2020-06-30 10:00:22 -04:00
e650a46073
Fixes local testing bug where working directory was sometimes wrong.
2020-06-29 16:41:42 -04:00
49e80398be
Merge branch 'rrt/dev' into dev
2020-06-29 14:56:01 -04:00
a996c81508
Gets mi_index out of Spiff task internal data
2020-06-28 11:35:35 -04:00
d4bcb9af65
Proper error handling in csv/dumps for approvals
2020-06-27 13:59:04 -06:00
848ad563d3
Only filters by mi_index if task has a mult_instance_index
2020-06-26 12:47:42 -04:00
f9f3003ef0
Filters by multi-instance index, if applicable
2020-06-26 12:31:37 -04:00
150117587e
Merge branch 'dev' into feature/parallel_multiinstance_tasks
2020-06-25 23:20:38 -04:00
665faaa175
Send emails from service
2020-06-25 16:18:42 -06:00
44995e3813
Merge branch 'feature/emails-enhancement' of github.com:sartography/cr-connect-workflow into feature/emails-enhancement
2020-06-25 14:37:04 -06:00
c3ceda4c2f
Replaces xml.etree with lxml.etree
2020-06-25 14:02:16 -04:00
7116b582e8
Splitting commands properly without losing double quoted strings
2020-06-25 12:01:24 -06:00
fe5a7ddce3
Merge remote-tracking branch 'origin/rrt/dev' into feature/emails-enhancement
2020-06-25 13:29:06 -04:00
5d1ae402b6
Slight refactor on data passed to template rendering
2020-06-24 22:43:44 -06:00
a0d877e02f
Feedback from PR addressed
2020-06-24 22:23:31 -06:00
5327b469f6
Merge branch 'rrt/dev' into feature/emails-enhancement
2020-06-24 21:46:53 -06:00
dd10e56d1a
Adding forgotten variables to returned dict
2020-06-22 14:56:24 -06:00
dc5ffd29d0
Refactoring shared code
2020-06-22 14:07:57 -06:00
e5541e4950
Enable CSV download
2020-06-22 09:24:58 -06:00
b8d60ca944
Spreadsheet generation
2020-06-22 07:14:00 -06:00
6aec15cc7c
Shifting to a different model, where the TaskEvents store ONLY the form data submitted for that task.
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In order to allow proper deletion of tasks, we no longer merge data returned from the front end, we set it directly as the task_data.
When returning data to the front end, we take any previous form submission and merge it into the current task data, allowing users to keep their previous submissions.
There is now an "extract_form_data" method that does it's best job to calculate what form data might have changed from the front end.
2020-06-19 08:22:53 -04:00
4db815a999
Handling incoming values from processor
2020-06-17 21:11:47 -06:00
Dan
mike cullerton
Kelly McDonald
Aaron Louie
Carlos Lopez