Commit Graph

381 Commits

Author SHA1 Message Date
Kelly McDonald 6e1fedb704 Add tests for libraries, remove an API endpoint that didn't make sense after recent changes and remove some commented out sections that were not needed after some decisions about the api endpoints were made 2021-08-03 10:02:22 -04:00
Kelly McDonald 41ad7935f8 Merge branch 'dev' into 367-Call-Activity
# Conflicts:
#	Pipfile.lock
2021-07-29 09:28:21 -04:00
Kelly McDonald b857fddbad commit in intermediate changes to work on a bug 2021-07-26 13:00:11 -04:00
Kelly McDonald 2455495457 got library side working - still need to have parent working 2021-07-22 10:20:34 -04:00
mike cullerton 690c059335 get_studies_for_user is no longer a static method 2021-07-09 10:37:57 -04:00
Dan fb54edac1c Adding additional details to error messages, and cleaning up the cruft around these messages to keep them clear and succinct.
Most noteable is the addition of the line on which the error occurs for script tasks.  It will report the line number and pass back the content of
the line that failed.
The validator only returns the first error it encounters, as it's clear that all we ever get right now is two of the same error.
Did a lot of work between this and spiffworkflow to remove all the places where we obfuscate or drop details as we converted between workflowExceptions and APIExceptions.
Dropped the python levenshtein dependency, in favor of just rolling a simple one ourselves in Spiffworkflow.
2021-07-07 00:53:49 -04:00
Dan 7aa4b0833c Merge remote-tracking branch 'origin/dev' into feature/documents_xls_refactor 2021-07-06 13:11:08 -04:00
Dan 1b1a994360 Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them.
Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
2021-07-06 13:10:20 -04:00
Kelly McDonald dce1d86e93 commit changes before looking at something else 2021-07-06 10:34:57 -04:00
NWalker4483 2ba52a7095 Merge remote-tracking branch 'origin/HEAD' into partial_testing 2021-06-29 11:21:49 -04:00
Dan 92ca506c8e Calls to eval no longer return the data, rather it will accept and return a key, allowing the front end to cache similar queries and not re-execute them. 2021-06-22 17:23:18 -04:00
Dan 1f3febe2df Fix the panda warnings, which means we only support xlsx files now.
Include the document details when reutnring a file from the file model.
Improve the validation of file form elements.
2021-06-22 14:58:52 -04:00
NWalker4483 4ca94b39ce Merge branch 'dev' of https://github.com/sartography/cr-connect-workflow into partial_testing 2021-06-17 15:12:28 -04:00
Dan acae6030f5 The API for evaluating python expressions should not raise an error, it can simply return a result of false, and provide an error to explain the problem. In this way the front end doesn't error out when it's running the script tasks but doesn't have enough information to get a valid response back.
The validation should take into account that repeating sections must be evaluated in the context of the data within the repeating section, not outside of it.
2021-06-15 16:17:15 -04:00
NWalker4483 5c5b966bc4 Merge branch 'dev' of https://github.com/sartography/cr-connect-workflow into partial_testing 2021-06-15 09:11:18 -04:00
Dan 7282419174 modified the tools api to return the expression and data with the result, making it easier to cash results on the front end, This should help drastically reduce the calls to the python_eval from the front end.
The post processors for form submissions needs to take repeating sections into account, or it won't find the files it is looking for.
2021-06-11 08:27:50 -04:00
NWalker4483 338fe30984 Merge branch 'dev' of https://github.com/sartography/cr-connect-workflow into partial_testing 2021-06-09 14:32:01 -04:00
Dan 286803d10b fixing a big stupid bug I created when merging all the code and making changes to the files. 2021-06-08 14:24:59 -04:00
Dan Funk 586a0f2f1a
Merge pull request #325 from sartography/feature/file_refactor
Prefer tasks that share a parent over just the the next available tas…
2021-06-08 11:28:23 -04:00
Dan Funk 9c4994581d
Merge pull request #324 from sartography/modify-infinite-loop-312
Modify infinite loop #312
2021-06-08 10:30:13 -04:00
Dan Funk a7b208f50a
Merge pull request #322 from sartography/data-store-refactor-330
Data store refactor #330
2021-06-08 08:58:53 -04:00
Dan Funk 6937c33719
Merge pull request #319 from sartography/datastore-file-endpoints-325
Datastore file endpoints #325
2021-06-08 08:54:43 -04:00
Dan Funk 5881c903ca
Merge pull request #316 from sartography/326-Multi_File_Data_Store
Make sure we are using the correct script engine
2021-06-08 08:49:43 -04:00
Dan 59f605c3df Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor. 2021-06-08 08:03:14 -04:00
mike cullerton 0dfc96d7f6 Modified `validate_workflow_specification` to accept new optional `validate_study_id` parameter.
We then pass validate_study_id on to WorkflowService.test_spec
2021-06-03 14:19:41 -04:00
mike cullerton 506b84a49a Import DataStoreBase from service now 2021-06-02 10:00:18 -04:00
mike cullerton 162dee45d3 Unused import 2021-06-01 16:34:21 -04:00
mike cullerton 1ed144536f New method for file datastore api endpoint 2021-06-01 13:50:04 -04:00
Kelly McDonald acccf3b704 Make sure we are using the correct script engine 2021-05-26 10:50:20 -04:00
Dan Funk 77f7fec5d4
Merge pull request #312 from sartography/study-is-none-329
Study is none #329
2021-05-14 16:33:04 -04:00
mike cullerton ce7c07679b SonarCloud 2021-05-14 15:52:30 -04:00
mike cullerton a9e3f7c861 Standalone workflows do not have a study_id, and we do not record task events for them. 2021-05-14 15:34:29 -04:00
Dan 7e6645db89 Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev 2021-05-14 14:10:19 -04:00
Dan 427875b8dd upgrading Sartography libraries, and fixing a potential error where a file can't be located in the documents.xslt 2021-05-14 14:10:14 -04:00
Dan Funk 99da502912
Merge branch 'dev' into 321-Markdown-Macro 2021-05-14 12:32:41 -04:00
Dan 7831bef050 Don't fail the sync completely when a remote file does not exist. 2021-05-05 15:59:00 -04:00
Kelly McDonald cbd1d01203 Add URL to the study_info('documents') script
fixes #321 - I merged in branches that fix #320 and #297

320-add-default-for-file-data-get
297-filename-in-documents
2021-05-05 11:30:08 -04:00
Dan 8f28970f92 Resolving an alembic conflict.
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens.  This seems to be working locally.
2021-05-04 13:39:49 -04:00
Dan Funk 34759a2f3d
Merge branch 'dev' into feature/performance-refactor 2021-05-04 11:30:13 -04:00
Dan Funk d6054a9846
Merge branch 'dev' into 310-task-event-timezone 2021-05-04 11:21:36 -04:00
Dan Funk 77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
Dan a719cf4bf9 When retrieving the study, only update the status of underlying workflows if specifically requested.
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
Kelly McDonald 2b9cee6b89 Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC 2021-04-29 10:25:28 -04:00
Kelly McDonald 799747d638 Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane. 2021-04-27 12:13:49 -04:00
Dan Funk 21e95b106d
Merge pull request #295 from sartography/299-document-datastore
Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
Dan 047c68b2b5 Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models 2021-04-26 12:31:22 -04:00
Mike Cullerton 39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204 2021-04-26 10:27:32 -04:00
Kelly McDonald d3d7eeb309 Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
Fixes #299
2021-04-26 09:41:14 -04:00
mike cullerton fa818bd751 Code for the 2 new api endpoints
Also modified `update_task` so that it no longer requires a study_id
2021-04-26 08:31:12 -04:00
Dan dd7c5fd1c1 Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files. 2021-04-23 16:16:19 -04:00