sartography/cr-connect-workflow
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In get study, only process categories when we ask

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This commit is contained in:
mike cullerton 2022-03-18 16:03:50 -04:00
parent 405c63aaef
commit f4d6b07467
1 changed files with 14 additions and 13 deletions
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27
crc/services/study_service.py
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@ -51,7 +51,7 @@ class StudyService(object):
studies = []
for study_model in db_studies:
if include_invalid or study_model.review_type in self.VALID_REVIEW_TYPES:
studies.append(StudyService.get_study(study_model.id, categories, study_model=study_model))
studies.append(StudyService.get_study(study_model.id, categories, study_model=study_model, process_categories=False))
return studies
@staticmethod
@ -69,7 +69,7 @@ class StudyService(object):
@staticmethod
@timeit
def get_study(study_id, categories: List[WorkflowSpecCategory], study_model: StudyModel = None,
master_workflow_results=None):
master_workflow_results=None, process_categories=False):
"""Returns a study model that contains all the workflows organized by category.
Pass in the results of the master workflow spec, and the status of other workflows will be updated."""
last_time = firsttime()
@ -95,17 +95,18 @@ class StudyService(object):
DocumentService.get_dictionary()) for model in files)
study.files = list(files)
last_time = sincetime("files", last_time)
if study.status != StudyStatus.abandoned:
for category in study.categories:
workflow_metas = StudyService._get_workflow_metas(study_id, category)
category_meta = []
if master_workflow_results:
study.warnings = StudyService._update_status_of_workflow_meta(workflow_metas,
master_workflow_results)
category_meta = StudyService._update_status_of_category_meta(master_workflow_results, category)
category.workflows = workflow_metas
category.meta = category_meta
last_time = sincetime("categories", last_time)
if process_categories:
if study.status != StudyStatus.abandoned:
for category in study.categories:
workflow_metas = StudyService._get_workflow_metas(study_id, category)
category_meta = []
if master_workflow_results:
study.warnings = StudyService._update_status_of_workflow_meta(workflow_metas,
master_workflow_results)
category_meta = StudyService._update_status_of_category_meta(master_workflow_results, category)
category.workflows = workflow_metas
category.meta = category_meta
last_time = sincetime("categories", last_time)
if study.primary_investigator is None:
associates = StudyService().get_study_associates(study.id)