Change the study_sponsors script so that we can actually call it :
var = study_info('sponsors')
to keep it more in line with other scripts that we have
This commit is contained in:
Kelly McDonald
parent
1815a4b657
commit
e598994d34
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@ -29,6 +29,33 @@ class StudyInfo(Script):
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"ind_number": "1234",
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"inactive": False
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},
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"sponsors": [
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 2453,
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"SP_NAME": "Abbott Ltd",
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"SP_TYPE": "Private",
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"SP_TYPE_GROUP_NAME": None,
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"SS_STUDY": 2
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},
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 2387,
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"SP_NAME": "Abbott-Price",
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"SP_TYPE": "Incoming Sub Award",
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"SP_TYPE_GROUP_NAME": "Government",
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"SS_STUDY": 2
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},
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 1996,
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"SP_NAME": "Abernathy-Heidenreich",
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"SP_TYPE": "Foundation/Not for Profit",
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"SP_TYPE_GROUP_NAME": "Other External Funding",
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"SS_STUDY": 2
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}
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],
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"investigators": {
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'PI': {
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'label': ProtocolBuilderInvestigatorType.PI.value,
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@ -165,6 +192,33 @@ Returns information specific to the protocol.
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"ind_number": "1234",
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"inactive": False
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},
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"sponsors": [
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 2453,
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"SP_NAME": "Abbott Ltd",
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"SP_TYPE": "Private",
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"SP_TYPE_GROUP_NAME": None,
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"SS_STUDY": 2
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},
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 2387,
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"SP_NAME": "Abbott-Price",
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"SP_TYPE": "Incoming Sub Award",
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"SP_TYPE_GROUP_NAME": "Government",
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"SS_STUDY": 2
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},
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 1996,
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"SP_NAME": "Abernathy-Heidenreich",
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"SP_TYPE": "Foundation/Not for Profit",
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"SP_TYPE_GROUP_NAME": "Other External Funding",
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"SS_STUDY": 2
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}
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],
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"investigators": {
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"PI": {
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"label": ProtocolBuilderInvestigatorType.PI.value,
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@ -1,70 +0,0 @@
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import json
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from crc.api.common import ApiError
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from crc.scripts.script import Script
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from crc.services.protocol_builder import ProtocolBuilderService
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class StudySponsors(Script):
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"""Please see the detailed description that is provided below. """
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pb = ProtocolBuilderService()
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# This is used for test/workflow validation, as well as documentation.
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example_data = [
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 2453,
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"SP_NAME": "Abbott Ltd",
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"SP_TYPE": "Private",
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"SP_TYPE_GROUP_NAME": None,
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"SS_STUDY": 2
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},
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 2387,
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"SP_NAME": "Abbott-Price",
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"SP_TYPE": "Incoming Sub Award",
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"SP_TYPE_GROUP_NAME": "Government",
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"SS_STUDY": 2
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},
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 1996,
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"SP_NAME": "Abernathy-Heidenreich",
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"SP_TYPE": "Foundation/Not for Profit",
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"SP_TYPE_GROUP_NAME": "Other External Funding",
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"SS_STUDY": 2
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}
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]
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def example_to_string(self, key):
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return json.dumps(self.example_data['StudyInfo'][key], indent=2, separators=(',', ': '))
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def get_description(self):
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return ""
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# return """
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# Returns a list of sponsors related to a study in the following format:
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# {{example}}
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#z """.format(example=json.dumps(self.example_data, index=2, separators=(',', ': ')))
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def check_args(self, args):
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if len(args) > 0:
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raise ApiError(code="invalid_argument",
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message="The Sponsor script does not take any arguments. "
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"It returns the list of sponsors for the current study only. ")
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def do_task_validate_only(self, task, study_id, workflow_id, *args, **kwargs):
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"""For validation only, pretend no results come back from pb"""
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self.check_args(args)
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return self.example_data
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def do_task(self, task, study_id, workflow_id, *args, **kwargs):
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self.check_args(args)
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retval = ProtocolBuilderService.get_sponsors(study_id)
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# Check on returning box, as in return Box(retval) - may not work with list.
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return retval
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@ -1,5 +1,5 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" id="Definitions_0kmksnn" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.3">
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<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" id="Definitions_0kmksnn" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.0">
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<bpmn:process id="Process_0exnnpv" isExecutable="true">
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<bpmn:startEvent id="StartEvent_1">
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<bpmn:outgoing>SequenceFlow_1nfe5m9</bpmn:outgoing>
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@ -8,7 +8,8 @@
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<bpmn:scriptTask id="Task_Script_Load_Study_Sponsors" name="Load Study Sponsors">
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<bpmn:incoming>SequenceFlow_1nfe5m9</bpmn:incoming>
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<bpmn:outgoing>SequenceFlow_1bqiin0</bpmn:outgoing>
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<bpmn:script>sponsors = study_sponsors()</bpmn:script>
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<bpmn:script>sponsors = study_info('sponsors')
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</bpmn:script>
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</bpmn:scriptTask>
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<bpmn:sequenceFlow id="SequenceFlow_1bqiin0" sourceRef="Task_Script_Load_Study_Sponsors" targetRef="EndEvent_171dj09" />
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<bpmn:endEvent id="EndEvent_171dj09">
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@ -4,7 +4,6 @@ from tests.base_test import BaseTest
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from crc import session, app
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from crc.models.study import StudyModel
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from crc.scripts.study_sponsors import StudySponsors
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from crc.services.study_service import StudyService
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from crc.services.workflow_processor import WorkflowProcessor
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from crc.services.workflow_service import WorkflowService
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@ -13,7 +12,12 @@ class TestSudySponsorsScript(BaseTest):
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test_uid = "dhf8r"
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test_study_id = 1
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def test_study_sponsors_script_validation(self):
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self.load_example_data() # study_info script complains if irb_documents.xls is not loaded
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# during the validate phase I'm going to assume that we will never
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# have a case where irb_documents.xls is not loaded ??
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self.load_test_spec("study_sponsors")
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WorkflowService.test_spec("study_sponsors") # This would raise errors if it didn't validate
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