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https://github.com/sartography/cr-connect-workflow.git
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Test and workflow for new script to delete IRB documents
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mike cullerton
parent
0eb6291740
commit
d81497f8cb
112
tests/data/add_delete_irb_document/add_delete_irb_document.bpmn
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112
tests/data/add_delete_irb_document/add_delete_irb_document.bpmn
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<?xml version="1.0" encoding="UTF-8"?>
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<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" xmlns:camunda="http://camunda.org/schema/1.0/bpmn" id="Definitions_3d948db" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.5.0">
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<bpmn:process id="Process_44b3aca" isExecutable="true">
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<bpmn:startEvent id="StartEvent_1">
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<bpmn:outgoing>Flow_1j6i6nv</bpmn:outgoing>
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</bpmn:startEvent>
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<bpmn:sequenceFlow id="Flow_1j6i6nv" sourceRef="StartEvent_1" targetRef="Activity_WhichIRBDocument" />
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<bpmn:sequenceFlow id="Flow_0oyc3ye" sourceRef="Activity_WhichIRBDocument" targetRef="Activity_CheckFileUploaded" />
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<bpmn:sequenceFlow id="Flow_1rexoi9" sourceRef="Activity_DeleteIRBDocument" targetRef="Activity_CheckFileDeleted" />
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<bpmn:endEvent id="Event_06rfn6m">
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<bpmn:incoming>Flow_0ry4bnx</bpmn:incoming>
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</bpmn:endEvent>
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<bpmn:userTask id="Activity_WhichIRBDocument" name="Which IRB Document" camunda:formKey="UploadIRBDoc">
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<bpmn:extensionElements>
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<camunda:formData>
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<camunda:formField id="irb_document" label="IRB Document" type="string" defaultValue="Study_Protocol_Document" />
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</camunda:formData>
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</bpmn:extensionElements>
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<bpmn:incoming>Flow_1j6i6nv</bpmn:incoming>
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<bpmn:outgoing>Flow_0oyc3ye</bpmn:outgoing>
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</bpmn:userTask>
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<bpmn:scriptTask id="Activity_CheckFileUploaded" name="Check File Uploaded">
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<bpmn:incoming>Flow_0oyc3ye</bpmn:incoming>
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<bpmn:outgoing>Flow_1gpekhi</bpmn:outgoing>
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<bpmn:script>uploaded = is_file_uploaded(irb_document)</bpmn:script>
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</bpmn:scriptTask>
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<bpmn:sequenceFlow id="Flow_1gpekhi" sourceRef="Activity_CheckFileUploaded" targetRef="Activity_DisplayFileUploaded" />
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<bpmn:manualTask id="Activity_DisplayFileUploaded" name="Display File Uploaded">
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<bpmn:documentation># Is file uploaded
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uploaded: {{uploaded}}</bpmn:documentation>
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<bpmn:incoming>Flow_1gpekhi</bpmn:incoming>
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<bpmn:outgoing>Flow_0qyam4h</bpmn:outgoing>
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</bpmn:manualTask>
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<bpmn:scriptTask id="Activity_DeleteIRBDocument" name="Delete IRB Document">
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<bpmn:incoming>Flow_0qyam4h</bpmn:incoming>
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<bpmn:outgoing>Flow_1rexoi9</bpmn:outgoing>
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<bpmn:script>delete_irb_document(irb_document=irb_document)</bpmn:script>
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</bpmn:scriptTask>
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<bpmn:scriptTask id="Activity_CheckFileDeleted" name="Check File Deleted">
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<bpmn:incoming>Flow_1rexoi9</bpmn:incoming>
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<bpmn:outgoing>Flow_06hfqyd</bpmn:outgoing>
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<bpmn:script>deleted = not is_file_uploaded(irb_document)</bpmn:script>
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</bpmn:scriptTask>
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<bpmn:sequenceFlow id="Flow_0qyam4h" sourceRef="Activity_DisplayFileUploaded" targetRef="Activity_DeleteIRBDocument" />
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<bpmn:sequenceFlow id="Flow_06hfqyd" sourceRef="Activity_CheckFileDeleted" targetRef="Activity_DisplayFileDeleted" />
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<bpmn:sequenceFlow id="Flow_0ry4bnx" sourceRef="Activity_DisplayFileDeleted" targetRef="Event_06rfn6m" />
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<bpmn:manualTask id="Activity_DisplayFileDeleted" name="Display File Deleted">
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<bpmn:documentation># Is file deleted
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deleted: {{deleted}}</bpmn:documentation>
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<bpmn:incoming>Flow_06hfqyd</bpmn:incoming>
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<bpmn:outgoing>Flow_0ry4bnx</bpmn:outgoing>
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</bpmn:manualTask>
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</bpmn:process>
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<bpmndi:BPMNDiagram id="BPMNDiagram_1">
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<bpmndi:BPMNPlane id="BPMNPlane_1" bpmnElement="Process_44b3aca">
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<bpmndi:BPMNEdge id="Flow_0oyc3ye_di" bpmnElement="Flow_0oyc3ye">
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<di:waypoint x="360" y="117" />
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<di:waypoint x="430" y="117" />
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</bpmndi:BPMNEdge>
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<bpmndi:BPMNEdge id="Flow_1j6i6nv_di" bpmnElement="Flow_1j6i6nv">
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<di:waypoint x="215" y="117" />
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<di:waypoint x="260" y="117" />
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</bpmndi:BPMNEdge>
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<bpmndi:BPMNEdge id="Flow_1gpekhi_di" bpmnElement="Flow_1gpekhi">
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<di:waypoint x="530" y="117" />
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<di:waypoint x="590" y="117" />
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</bpmndi:BPMNEdge>
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<bpmndi:BPMNEdge id="Flow_0qyam4h_di" bpmnElement="Flow_0qyam4h">
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<di:waypoint x="640" y="157" />
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<di:waypoint x="640" y="220" />
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<di:waypoint x="310" y="220" />
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<di:waypoint x="310" y="280" />
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</bpmndi:BPMNEdge>
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<bpmndi:BPMNEdge id="Flow_1rexoi9_di" bpmnElement="Flow_1rexoi9">
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<di:waypoint x="360" y="320" />
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<di:waypoint x="430" y="320" />
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</bpmndi:BPMNEdge>
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<bpmndi:BPMNEdge id="Flow_06hfqyd_di" bpmnElement="Flow_06hfqyd">
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<di:waypoint x="530" y="320" />
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<di:waypoint x="590" y="320" />
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</bpmndi:BPMNEdge>
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<bpmndi:BPMNEdge id="Flow_0ry4bnx_di" bpmnElement="Flow_0ry4bnx">
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<di:waypoint x="690" y="320" />
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<di:waypoint x="742" y="320" />
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</bpmndi:BPMNEdge>
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<bpmndi:BPMNShape id="_BPMNShape_StartEvent_2" bpmnElement="StartEvent_1">
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<dc:Bounds x="179" y="99" width="36" height="36" />
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</bpmndi:BPMNShape>
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<bpmndi:BPMNShape id="Activity_176crcy_di" bpmnElement="Activity_WhichIRBDocument">
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<dc:Bounds x="260" y="77" width="100" height="80" />
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</bpmndi:BPMNShape>
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<bpmndi:BPMNShape id="Activity_0015703_di" bpmnElement="Activity_CheckFileUploaded">
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<dc:Bounds x="430" y="77" width="100" height="80" />
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</bpmndi:BPMNShape>
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<bpmndi:BPMNShape id="Activity_1kmb6qu_di" bpmnElement="Activity_CheckFileDeleted">
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<dc:Bounds x="430" y="280" width="100" height="80" />
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</bpmndi:BPMNShape>
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<bpmndi:BPMNShape id="Activity_0om2kg5_di" bpmnElement="Activity_DeleteIRBDocument">
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<dc:Bounds x="260" y="280" width="100" height="80" />
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</bpmndi:BPMNShape>
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<bpmndi:BPMNShape id="Activity_11nq3xj_di" bpmnElement="Activity_DisplayFileUploaded">
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<dc:Bounds x="590" y="77" width="100" height="80" />
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</bpmndi:BPMNShape>
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<bpmndi:BPMNShape id="Activity_0cbkkzl_di" bpmnElement="Activity_DisplayFileDeleted">
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<dc:Bounds x="590" y="280" width="100" height="80" />
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</bpmndi:BPMNShape>
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<bpmndi:BPMNShape id="Event_06rfn6m_di" bpmnElement="Event_06rfn6m">
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<dc:Bounds x="742" y="302" width="36" height="36" />
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</bpmndi:BPMNShape>
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</bpmndi:BPMNPlane>
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</bpmndi:BPMNDiagram>
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</bpmn:definitions>
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39
tests/workflow/test_workflow_delete_irb_document.py
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39
tests/workflow/test_workflow_delete_irb_document.py
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from tests.base_test import BaseTest
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from crc.services.file_service import FileService
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from crc.scripts.is_file_uploaded import IsFileUploaded
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import io
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class TestDeleteIRBDocument(BaseTest):
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def test_delete_irb_document(self):
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self.load_example_data()
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irb_code = 'Study_Protocol_Document'
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workflow = self.create_workflow('add_delete_irb_document')
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study_id = workflow.study_id
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workflow_api = self.get_workflow_api(workflow)
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first_task = workflow_api.next_task
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files = FileService.get_files_for_study(study_id)
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self.assertEqual(0, len(files))
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self.assertEqual(False, IsFileUploaded.do_task(IsFileUploaded, first_task, study_id, workflow.id, irb_code))
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# Add a file
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FileService.add_workflow_file(workflow_id=workflow.id,
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name="filename.txt", content_type="text",
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binary_data=b'1234', irb_doc_code=irb_code)
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self.assertEqual(True, IsFileUploaded.do_task(IsFileUploaded, first_task, study_id, workflow.id, irb_code))
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self.complete_form(workflow, first_task, {'irb_document': irb_code})
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workflow_api = self.get_workflow_api(workflow)
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second_task = workflow_api.next_task
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self.assertEqual('# Is file uploaded\nuploaded: True', second_task.documentation)
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self.complete_form(workflow, second_task, {})
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workflow_api = self.get_workflow_api(workflow)
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third_task = workflow_api.next_task
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self.assertEqual('# Is file deleted\ndeleted: True', third_task.documentation)
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print('test_delete_irb_document')
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