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cr-connect-workflow
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Change `do_task_validate_only` in study_info script to call the real do_task. 

We do this so we can seed settings into the workflow for testing different scenarios using the study from validate_study_id
This commit is contained in:
mike cullerton 2021-06-03 14:28:24 -04:00
parent c41657301a
commit 9a63ab9c4f
1 changed files with 6 additions and 192 deletions
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198
crc/scripts/study_info.py
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@ -4,9 +4,10 @@ from SpiffWorkflow.bpmn.PythonScriptEngine import Box
from crc import session
from crc.api.common import ApiError
from crc.api.workflow import get_workflow
from crc.models.protocol_builder import ProtocolBuilderInvestigatorType
from crc.models.study import StudyModel, StudySchema
from crc.models.workflow import WorkflowStatus
from crc.api import workflow as workflow_api
from crc.scripts.script import Script
from crc.services.cache_service import timeit
from crc.services.file_service import FileService
@ -172,197 +173,10 @@ Returns information specific to the protocol.
# Assure the reference file exists (a bit hacky, but we want to raise this error early, and cleanly.)
FileService.get_reference_file_data(FileService.DOCUMENT_LIST)
FileService.get_reference_file_data(FileService.INVESTIGATOR_LIST)
data = {
"study": {
"info": {
"id": 12,
"title": "test",
"short_title": "tst",
"primary_investigator_id": 21,
"user_uid": "dif84",
"sponsor": "sponsor",
"ind_number": "1234",
"inactive": False
},
"sponsors": [
{
"COMMONRULEAGENCY": None,
"SPONSOR_ID": 2453,
"SP_NAME": "Abbott Ltd",
"SP_TYPE": "Private",
"SP_TYPE_GROUP_NAME": None,
"SS_STUDY": 2
},
{
"COMMONRULEAGENCY": None,
"SPONSOR_ID": 2387,
"SP_NAME": "Abbott-Price",
"SP_TYPE": "Incoming Sub Award",
"SP_TYPE_GROUP_NAME": "Government",
"SS_STUDY": 2
},
{
"COMMONRULEAGENCY": None,
"SPONSOR_ID": 1996,
"SP_NAME": "Abernathy-Heidenreich",
"SP_TYPE": "Foundation/Not for Profit",
"SP_TYPE_GROUP_NAME": "Other External Funding",
"SS_STUDY": 2
}
],
"investigators": {
"PI": {
"label": ProtocolBuilderInvestigatorType.PI.value,
"display": "Always",
"unique": "Yes",
"user_id": "dhf8r",
"title": "",
"display_name": "Daniel Harold Funk",
"sponsor_type": "Contractor",
"telephone_number": "0000000000",
"department": "",
"email_address": "dhf8r@virginia.edu",
"given_name": "Daniel",
"uid": "dhf8r",
"affiliation": "",
"date_cached": "2020-08-04T19:32:08.006128+00:00"
},
"SC_I": {
"label": ProtocolBuilderInvestigatorType.SC_I.value,
"display": "Always",
"unique": "Yes",
"user_id": "ajl2j",
"title": "",
"display_name": "Aaron Louie",
"sponsor_type": "Contractor",
"telephone_number": "0000000000",
"department": "",
"email_address": "ajl2j@virginia.edu",
"given_name": "Aaron",
"uid": "ajl2j",
"affiliation": "sponsored",
"date_cached": "2020-08-04T19:32:10.699666+00:00"
},
"SC_II": {
"label": ProtocolBuilderInvestigatorType.SC_II.value,
"display": "Optional",
"unique": "Yes",
"user_id": "cah3us",
"title": "",
"display_name": "Alex Herron",
"sponsor_type": "Contractor",
"telephone_number": "0000000000",
"department": "",
"email_address": "cah3us@virginia.edu",
"given_name": "Alex",
"uid": "cah3us",
"affiliation": "sponsored",
"date_cached": "2020-08-04T19:32:10.075852+00:00"
},
},
"pi": {
"PI": {
"label": ProtocolBuilderInvestigatorType.PI.value,
"display": "Always",
"unique": "Yes",
"user_id": "dhf8r",
"title": "",
"display_name": "Daniel Harold Funk",
"sponsor_type": "Contractor",
"telephone_number": "0000000000",
"department": "",
"email_address": "dhf8r@virginia.edu",
"given_name": "Daniel",
"uid": "dhf8r",
"affiliation": "",
"date_cached": "2020-08-04T19:32:08.006128+00:00"
}
},
"roles":
{
"INVESTIGATORTYPE": "PI",
"INVESTIGATORTYPEFULL": ProtocolBuilderInvestigatorType.PI.value,
"NETBADGEID": "dhf8r"
},
"details":
{
"DSMB": None,
"DSMB_FREQUENCY": None,
"GCRC_NUMBER": None,
"IBC_NUMBER": None,
"IDE": None,
"IND_1": 1234,
"IND_2": None,
"IND_3": None,
"IRBREVIEWERADMIN": None,
"IS_ADULT_PARTICIPANT": None,
"IS_APPROVED_DEVICE": None,
"IS_AUX": None,
"IS_BIOMEDICAL": None,
"IS_CANCER_PATIENT": None,
"IS_CENTRAL_REG_DB": None,
"IS_CHART_REVIEW": None,
"IS_COMMITTEE_CONFLICT": None,
"IS_CONSENT_WAIVER": None,
"IS_DB": None,
"IS_ELDERLY_POP": None,
"IS_ENGAGED_RESEARCH": None,
"IS_FETUS_POP": None,
"IS_FINANCIAL_CONFLICT": None,
"IS_FOR_CANCER_CENTER": None,
"IS_FUNDING_SOURCE": None,
"IS_GCRC": None,
"IS_GENE_TRANSFER": None,
"IS_GRANT": None,
"IS_HGT": None,
"IS_IBC": None,
"IS_IDE": None,
"IS_IND": 1,
"IS_MENTAL_IMPAIRMENT_POP": None,
"IS_MINOR": None,
"IS_MINOR_PARTICIPANT": None,
"IS_MULTI_SITE": None,
"IS_NOT_CONSENT_WAIVER": None,
"IS_NOT_PRC_WAIVER": None,
"IS_OTHER_VULNERABLE_POP": None,
"IS_OUTSIDE_CONTRACT": None,
"IS_PI_INITIATED": None,
"IS_PI_SCHOOL": None,
"IS_PRC": None,
"IS_PRC_DSMP": None,
"IS_PREGNANT_POP": None,
"IS_PRISONERS_POP": None,
"IS_QUALITATIVE": None,
"IS_RADIATION": None,
"IS_REVIEW_BY_CENTRAL_IRB": None,
"IS_SPONSOR": None,
"IS_SPONSOR_MONITORING": None,
"IS_SURROGATE_CONSENT": None,
"IS_TISSUE_BANKING": None,
"IS_UVA_DB": None,
"IS_UVA_IDE": None,
"IS_UVA_IND": None,
"IS_UVA_LOCATION": None,
"IS_UVA_PI_MULTI": None,
"MULTI_SITE_LOCATIONS": None,
"NON_UVA_LOCATION": None,
"OTHER_VULNERABLE_DESC": None,
"PRC_NUMBER": None,
"SPONSORS_PROTOCOL_REVISION_DATE": None,
"UPLOAD_COMPLETE": None
},
'protocol': {
'id': 0,
}
}
}
if args[0] == 'documents':
return self.box_it(StudyService().get_documents_status(study_id))
return self.box_it(data['study'][args[0]])
# self.add_data_to_task(task=task, data=data["study"])
# self.add_data_to_task(task, {"documents": StudyService().get_documents_status(study_id)})
# we call the real do_task so we can
# seed workflow validations with settings from studies in PB Mock
# in order to test multiple paths thru the workflow
return self.do_task(task, study_id, workflow_id, args[0])
@timeit
def do_task(self, task, study_id, workflow_id, *args, **kwargs):