Change `do_task_validate_only` in study_info script to call the real do_task.
We do this so we can seed settings into the workflow for testing different scenarios using the study from validate_study_id
This commit is contained in:
mike cullerton
parent
c41657301a
commit
9a63ab9c4f
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@ -4,9 +4,10 @@ from SpiffWorkflow.bpmn.PythonScriptEngine import Box
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from crc import session
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from crc import session
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from crc.api.common import ApiError
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from crc.api.common import ApiError
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from crc.api.workflow import get_workflow
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from crc.models.protocol_builder import ProtocolBuilderInvestigatorType
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from crc.models.protocol_builder import ProtocolBuilderInvestigatorType
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from crc.models.study import StudyModel, StudySchema
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from crc.models.study import StudyModel, StudySchema
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from crc.models.workflow import WorkflowStatus
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from crc.api import workflow as workflow_api
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from crc.scripts.script import Script
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from crc.scripts.script import Script
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from crc.services.cache_service import timeit
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from crc.services.cache_service import timeit
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from crc.services.file_service import FileService
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from crc.services.file_service import FileService
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@ -172,197 +173,10 @@ Returns information specific to the protocol.
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# Assure the reference file exists (a bit hacky, but we want to raise this error early, and cleanly.)
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# Assure the reference file exists (a bit hacky, but we want to raise this error early, and cleanly.)
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FileService.get_reference_file_data(FileService.DOCUMENT_LIST)
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FileService.get_reference_file_data(FileService.DOCUMENT_LIST)
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FileService.get_reference_file_data(FileService.INVESTIGATOR_LIST)
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FileService.get_reference_file_data(FileService.INVESTIGATOR_LIST)
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data = {
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# we call the real do_task so we can
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"study": {
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# seed workflow validations with settings from studies in PB Mock
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"info": {
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# in order to test multiple paths thru the workflow
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"id": 12,
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return self.do_task(task, study_id, workflow_id, args[0])
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"title": "test",
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"short_title": "tst",
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"primary_investigator_id": 21,
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"user_uid": "dif84",
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"sponsor": "sponsor",
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"ind_number": "1234",
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"inactive": False
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},
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"sponsors": [
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 2453,
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"SP_NAME": "Abbott Ltd",
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"SP_TYPE": "Private",
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"SP_TYPE_GROUP_NAME": None,
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"SS_STUDY": 2
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},
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 2387,
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"SP_NAME": "Abbott-Price",
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"SP_TYPE": "Incoming Sub Award",
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"SP_TYPE_GROUP_NAME": "Government",
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"SS_STUDY": 2
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},
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{
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"COMMONRULEAGENCY": None,
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"SPONSOR_ID": 1996,
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"SP_NAME": "Abernathy-Heidenreich",
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"SP_TYPE": "Foundation/Not for Profit",
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"SP_TYPE_GROUP_NAME": "Other External Funding",
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"SS_STUDY": 2
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}
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],
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"investigators": {
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"PI": {
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"label": ProtocolBuilderInvestigatorType.PI.value,
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"display": "Always",
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"unique": "Yes",
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"user_id": "dhf8r",
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"title": "",
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"display_name": "Daniel Harold Funk",
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"sponsor_type": "Contractor",
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"telephone_number": "0000000000",
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"department": "",
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"email_address": "dhf8r@virginia.edu",
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"given_name": "Daniel",
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"uid": "dhf8r",
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"affiliation": "",
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"date_cached": "2020-08-04T19:32:08.006128+00:00"
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},
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"SC_I": {
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"label": ProtocolBuilderInvestigatorType.SC_I.value,
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"display": "Always",
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"unique": "Yes",
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"user_id": "ajl2j",
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"title": "",
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"display_name": "Aaron Louie",
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"sponsor_type": "Contractor",
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"telephone_number": "0000000000",
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"department": "",
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"email_address": "ajl2j@virginia.edu",
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"given_name": "Aaron",
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"uid": "ajl2j",
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"affiliation": "sponsored",
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"date_cached": "2020-08-04T19:32:10.699666+00:00"
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},
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"SC_II": {
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"label": ProtocolBuilderInvestigatorType.SC_II.value,
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"display": "Optional",
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"unique": "Yes",
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"user_id": "cah3us",
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"title": "",
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"display_name": "Alex Herron",
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"sponsor_type": "Contractor",
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"telephone_number": "0000000000",
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"department": "",
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"email_address": "cah3us@virginia.edu",
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"given_name": "Alex",
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"uid": "cah3us",
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"affiliation": "sponsored",
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"date_cached": "2020-08-04T19:32:10.075852+00:00"
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},
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},
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"pi": {
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"PI": {
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"label": ProtocolBuilderInvestigatorType.PI.value,
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"display": "Always",
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"unique": "Yes",
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"user_id": "dhf8r",
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"title": "",
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"display_name": "Daniel Harold Funk",
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"sponsor_type": "Contractor",
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"telephone_number": "0000000000",
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"department": "",
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"email_address": "dhf8r@virginia.edu",
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"given_name": "Daniel",
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"uid": "dhf8r",
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"affiliation": "",
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"date_cached": "2020-08-04T19:32:08.006128+00:00"
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}
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},
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"roles":
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{
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"INVESTIGATORTYPE": "PI",
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"INVESTIGATORTYPEFULL": ProtocolBuilderInvestigatorType.PI.value,
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"NETBADGEID": "dhf8r"
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},
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"details":
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{
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"DSMB": None,
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"DSMB_FREQUENCY": None,
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"GCRC_NUMBER": None,
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"IBC_NUMBER": None,
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"IDE": None,
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"IND_1": 1234,
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"IND_2": None,
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"IND_3": None,
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"IRBREVIEWERADMIN": None,
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"IS_ADULT_PARTICIPANT": None,
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"IS_APPROVED_DEVICE": None,
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"IS_AUX": None,
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"IS_BIOMEDICAL": None,
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"IS_CANCER_PATIENT": None,
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"IS_CENTRAL_REG_DB": None,
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"IS_CHART_REVIEW": None,
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"IS_COMMITTEE_CONFLICT": None,
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"IS_CONSENT_WAIVER": None,
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"IS_DB": None,
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"IS_ELDERLY_POP": None,
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"IS_ENGAGED_RESEARCH": None,
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"IS_FETUS_POP": None,
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"IS_FINANCIAL_CONFLICT": None,
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"IS_FOR_CANCER_CENTER": None,
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"IS_FUNDING_SOURCE": None,
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"IS_GCRC": None,
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"IS_GENE_TRANSFER": None,
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"IS_GRANT": None,
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"IS_HGT": None,
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"IS_IBC": None,
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"IS_IDE": None,
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"IS_IND": 1,
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"IS_MENTAL_IMPAIRMENT_POP": None,
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"IS_MINOR": None,
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"IS_MINOR_PARTICIPANT": None,
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"IS_MULTI_SITE": None,
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"IS_NOT_CONSENT_WAIVER": None,
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"IS_NOT_PRC_WAIVER": None,
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"IS_OTHER_VULNERABLE_POP": None,
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"IS_OUTSIDE_CONTRACT": None,
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"IS_PI_INITIATED": None,
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"IS_PI_SCHOOL": None,
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"IS_PRC": None,
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"IS_PRC_DSMP": None,
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"IS_PREGNANT_POP": None,
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"IS_PRISONERS_POP": None,
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"IS_QUALITATIVE": None,
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"IS_RADIATION": None,
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"IS_REVIEW_BY_CENTRAL_IRB": None,
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"IS_SPONSOR": None,
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"IS_SPONSOR_MONITORING": None,
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"IS_SURROGATE_CONSENT": None,
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"IS_TISSUE_BANKING": None,
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"IS_UVA_DB": None,
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"IS_UVA_IDE": None,
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"IS_UVA_IND": None,
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"IS_UVA_LOCATION": None,
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"IS_UVA_PI_MULTI": None,
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"MULTI_SITE_LOCATIONS": None,
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"NON_UVA_LOCATION": None,
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"OTHER_VULNERABLE_DESC": None,
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"PRC_NUMBER": None,
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"SPONSORS_PROTOCOL_REVISION_DATE": None,
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"UPLOAD_COMPLETE": None
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},
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'protocol': {
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'id': 0,
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}
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}
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}
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if args[0] == 'documents':
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return self.box_it(StudyService().get_documents_status(study_id))
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return self.box_it(data['study'][args[0]])
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# self.add_data_to_task(task=task, data=data["study"])
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# self.add_data_to_task(task, {"documents": StudyService().get_documents_status(study_id)})
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@timeit
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@timeit
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def do_task(self, task, study_id, workflow_id, *args, **kwargs):
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def do_task(self, task, study_id, workflow_id, *args, **kwargs):
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