When validating a workflow, don't run the master workflow multiple times, its a huge waste of time.

Provide decent data when calling get_study_associate(s) scripts.

crc/api/workflow.py

@@ -5,7 +5,7 @@ from flask import g
 from crc import session
 from crc.api.common import ApiError, ApiErrorSchema
 from crc.models.api_models import WorkflowApiSchema
-from crc.models.file import FileModel, LookupDataSchema
+from crc.models.file import FileModel
 from crc.models.study import StudyModel, WorkflowMetadata, StudyStatus
 from crc.models.task_event import TaskEventModel, TaskEvent, TaskEventSchema
 from crc.models.workflow import WorkflowModel, WorkflowSpecModelSchema, WorkflowSpecModel, WorkflowSpecCategoryModel, \
@@ -101,8 +101,10 @@ def drop_workflow_spec_library(spec_id,library_id):
     libraries: WorkflowLibraryModel = session.query(WorkflowLibraryModel).filter_by(workflow_spec_id=spec_id).all()
     return WorkflowLibraryModelSchema(many=True).dump(libraries)
 
+
 def validate_workflow_specification(spec_id, study_id=None, test_until=None):
     try:
+        WorkflowService.raise_if_disabled(spec_id, study_id)
         WorkflowService.test_spec(spec_id, study_id, test_until)
         WorkflowService.test_spec(spec_id, study_id, test_until, required_only=True)
     except ApiError as ae:

crc/scripts/get_study_associate.py

@@ -18,7 +18,20 @@ example : get_study_associate('sbp3ey') => {'uid':'sbp3ey','role':'Unicorn Herde
     def do_task_validate_only(self, task, study_id, workflow_id, *args, **kwargs):
         if len(args) < 1:
             raise ApiError('no_user_id_specified', 'A uva uid is the sole argument to this function')
-        return {'uid': 'sbp3ey', 'role': 'Unicorn Herder', 'send_email': False, 'access': True}
+        return {'uid': 'sbp3ey',
+                'role': 'Unicorn Herder',
+                'send_email': False,
+                'access': True,
+                'ldap_info': {
+                    'uid': 'sbp3ey',
+                    'display_name': "Simply Delightful",
+                    'email_address': 'sbp3ey@virginia.edu',
+                    'telephone_number': '',
+                    'title': '',
+                    'department': '',
+                    'affiliation': '',
+                    'sponsor_type': '',
+                }}
 
     def do_task(self, task, study_id, workflow_id, *args, **kwargs):
         if len(args) < 1:

crc/scripts/get_study_associates.py

@@ -20,8 +20,28 @@ example : get_study_associates() => [{'uid':'sbp3ey','role':'Unicorn Herder', 's
 
     def do_task_validate_only(self, task, study_id, workflow_id, *args, **kwargs):
         study_associates = [
-            {'uid': 'dhf8r', 'role': 'Chief Bee Keeper', 'send_email': True, 'access': True},
-            {'uid': 'lb3dp', 'role': 'Chief Cat Herder', 'send_email': True, 'access': True}
+            {'uid': 'dhf8r', 'role': 'Chief Bee Keeper', 'send_email': True, 'access': True,
+             'ldap_info': {
+                    'uid': 'dhf8r',
+                    'display_name': "Dan Funk",
+                     'email_address': 'dhf8r@virginia.edu',
+                     'telephone_number': '',
+                     'title': '',
+                     'department': '',
+                     'affiliation': '',
+                    'sponsor_type': '',
+             }},
+            {'uid': 'lb3dp', 'role': 'Chief Cat Herder', 'send_email': True, 'access': True,
+             'ldap_info': {
+                 'uid': 'dhf8r',
+                 'display_name': "Dan Funk",
+                 'email_address': 'dhf8r@virginia.edu',
+                 'telephone_number': '',
+                 'title': '',
+                 'department': '',
+                 'affiliation': '',
+                 'sponsor_type': ''
+             }},
         ]
         return study_associates
 

crc/scripts/study_info.py

@@ -165,15 +165,10 @@ Please note this is just a few examples, ALL known document types are returned i
                    )
 
     def do_task_validate_only(self, task, study_id, workflow_id, *args, **kwargs):
-        """For validation only, pretend no results come back from pb"""
-        self.check_args(args, 2)
-        # Assure the reference file exists (a bit hacky, but we want to raise this error early, and cleanly.)
-        FileService.get_reference_file_data(DocumentService.DOCUMENT_LIST)
-        FileService.get_reference_file_data(StudyService.INVESTIGATOR_LIST)
         # we call the real do_task so we can
         # seed workflow validations with settings from studies in PB Mock
         # in order to test multiple paths thru the workflow
-        return self.do_task(task, study_id, workflow_id, args[0])
+        return self.do_task(task, study_id, workflow_id, *args, **kwargs)
 
     @timeit
     def do_task(self, task, study_id, workflow_id, *args, **kwargs):

crc/services/workflow_service.py

@@ -123,6 +123,16 @@ class WorkflowService(object):
                                   workflow_model.study_id,
                                   str(e)))
 
+    @staticmethod
+    def raise_if_disabled(spec_id, study_id):
+        """Raise an exception of the workflow is not enabled and can not be executed."""
+        if study_id is not None:
+            study_model = session.query(StudyModel).filter(StudyModel.id == study_id).first()
+            spec_model = session.query(WorkflowSpecModel).filter(WorkflowSpecModel.id == spec_id).first()
+            status = StudyService._get_study_status(study_model)
+            if spec_model.id in status and status[spec_model.id]['status'] == 'disabled':
+                raise ApiError(code='disabled_workflow', message=f"This workflow is disabled. {status[spec_model.id]['message']}")
+
     @staticmethod
     @timeit
     def test_spec(spec_id, validate_study_id=None, test_until=None, required_only=False):
@@ -130,19 +140,12 @@ class WorkflowService(object):
           Not fool-proof, but a good sanity check.  Returns the final data
           output form the last task if successful.
 
-          test_until
+          test_until - stop running the validation when you reach this task spec.
 
           required_only can be set to true, in which case this will run the
           spec, only completing the required fields, rather than everything.
           """
 
-        # Get workflow state dictionary, make sure workflow is not disabled.
-        if validate_study_id is not None:
-            study_model = session.query(StudyModel).filter(StudyModel.id == validate_study_id).first()
-            spec_model = session.query(WorkflowSpecModel).filter(WorkflowSpecModel.id == spec_id).first()
-            status = StudyService._get_study_status(study_model)
-            if spec_model.id in status and status[spec_model.id]['status'] == 'disabled':
-                raise ApiError(code='disabled_workflow', message=f"This workflow is disabled. {status[spec_model.id]['message']}")
         workflow_model = WorkflowService.make_test_workflow(spec_id, validate_study_id)
         try:
             processor = WorkflowProcessor(workflow_model, validate_only=True)

tests/test_verify_end_event.py

@@ -25,3 +25,6 @@ class TestValidateEndEvent(BaseTest):
             self.assertEqual(8, e.line_number)
             self.assertEqual('{%- if value = 1 -%}', e.error_line)
             self.assertEqual('verify_end_event.bpmn', e.file_name)
+
+
+