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cr-connect-workflow
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Removed total_tasks and completed_tasks - as they are no longer used by the front end, and were dubious as hell to begin with. 

Upraded SpiffWorkflow and now use th new get_subprocess_specs
updated the calculate_stats in the workflow processor - as the serialization had changed drastically, and needed to debug some performance issues.
Added a get_navigation method that will calcuate a basic navigation list MUCH faster than using the get_flat_nav_list in Spiffworkflows Navigation object.
Modified a hellton of tests because we don't have total_task and completed_task counts, or a complex nested navigation list anymore.
This commit is contained in:
Dan 2022-07-20 12:10:23 -04:00
parent 706a7a5859
commit 4305b36b74
13 changed files with 128 additions and 154 deletions
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@ -52,7 +52,7 @@ dateparser = "*"
# pipenv install --editable ../SpiffWorkflow (but fix things back before commiting!) # pipenv install --editable ../SpiffWorkflow (but fix things back before commiting!)
# Merged Commit https://github.com/sartography/SpiffWorkflow/pull/178 broke usage of SpiffWorkflow # Merged Commit https://github.com/sartography/SpiffWorkflow/pull/178 broke usage of SpiffWorkflow
# References to task states will need to be updated to allow using newest version # References to task states will need to be updated to allow using newest version
spiffworkflow = {git = "https://github.com/sartography/SpiffWorkflow"} spiffworkflow = {editable = true, path = "./../SpiffWorkflow"}
[requires] [requires]
python_version = "3.9" python_version = "3.9"

87
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@ -1209,7 +1210,7 @@
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"sha256:fc53893b3da2c33de295667a0e19f078c14bf86544af307354de5fcf12a3f30d" "sha256:fc53893b3da2c33de295667a0e19f078c14bf86544af307354de5fcf12a3f30d"
], ],
"markers": "python_version >= '3.6'", "markers": "python_full_version >= '3.6.0'",
"version": "==2.3.2.post1" "version": "==2.3.2.post1"
}, },
"sphinx": { "sphinx": {
@ -1241,7 +1242,7 @@
"sha256:d412243dfb797ae3ec2b59eca0e52dac12e75a241bf0e4eb861e450d06c6ed07", "sha256:d412243dfb797ae3ec2b59eca0e52dac12e75a241bf0e4eb861e450d06c6ed07",
"sha256:f5f8bb2d0d629f398bf47d0d69c07bc13b65f75a81ad9e2f71a63d4b7a2f6db2" "sha256:f5f8bb2d0d629f398bf47d0d69c07bc13b65f75a81ad9e2f71a63d4b7a2f6db2"
], ],
"markers": "python_version >= '3.6'", "markers": "python_full_version >= '3.6.0'",
"version": "==2.0.0" "version": "==2.0.0"
}, },
"sphinxcontrib-jsmath": { "sphinxcontrib-jsmath": {
@ -1269,8 +1270,8 @@
"version": "==1.1.5" "version": "==1.1.5"
}, },
"spiffworkflow": { "spiffworkflow": {
"git": "https://github.com/sartography/SpiffWorkflow", "editable": true,
"ref": "888326a0419fb0fd1f96a2bd8a9f9c3894f2dbdc" "path": "./../SpiffWorkflow"
}, },
"sqlalchemy": { "sqlalchemy": {
"hashes": [ "hashes": [
@ -1327,7 +1328,7 @@
"sha256:238e70234214138ed7b4e8a0fab0e5e13872edab3be586ab8198c407620e2ab9", "sha256:238e70234214138ed7b4e8a0fab0e5e13872edab3be586ab8198c407620e2ab9",
"sha256:8b536a8ec63dc0751342b3984193a3118f8fca2afe25752bb9b7fffd398552d3" "sha256:8b536a8ec63dc0751342b3984193a3118f8fca2afe25752bb9b7fffd398552d3"
], ],
"markers": "python_version >= '3.6'", "markers": "python_full_version >= '3.6.0'",
"version": "==2022.1" "version": "==2022.1"
}, },
"tzlocal": { "tzlocal": {
@ -1335,7 +1336,7 @@
"sha256:89885494684c929d9191c57aa27502afc87a579be5cdd3225c77c463ea043745", "sha256:89885494684c929d9191c57aa27502afc87a579be5cdd3225c77c463ea043745",
"sha256:ee5842fa3a795f023514ac2d801c4a81d1743bbe642e3940143326b3a00addd7" "sha256:ee5842fa3a795f023514ac2d801c4a81d1743bbe642e3940143326b3a00addd7"
], ],
"markers": "python_version >= '3.6'", "markers": "python_full_version >= '3.6.0'",
"version": "==4.2" "version": "==4.2"
}, },
"urllib3": { "urllib3": {
@ -1343,7 +1344,7 @@
"sha256:8298d6d56d39be0e3bc13c1c97d133f9b45d797169a0e11cdd0e0489d786f7ec", "sha256:8298d6d56d39be0e3bc13c1c97d133f9b45d797169a0e11cdd0e0489d786f7ec",
"sha256:879ba4d1e89654d9769ce13121e0f94310ea32e8d2f8cf587b77c08bbcdb30d6" "sha256:879ba4d1e89654d9769ce13121e0f94310ea32e8d2f8cf587b77c08bbcdb30d6"
], ],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5' and python_full_version < '4.0.0'", "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5' and python_version < '4'",
"version": "==1.26.10" "version": "==1.26.10"
}, },
"vine": { "vine": {
@ -1351,7 +1352,7 @@
"sha256:4c9dceab6f76ed92105027c49c823800dd33cacce13bdedc5b914e3514b7fb30", "sha256:4c9dceab6f76ed92105027c49c823800dd33cacce13bdedc5b914e3514b7fb30",
"sha256:7d3b1624a953da82ef63462013bbd271d3eb75751489f9807598e8f340bd637e" "sha256:7d3b1624a953da82ef63462013bbd271d3eb75751489f9807598e8f340bd637e"
], ],
"markers": "python_version >= '3.6'", "markers": "python_full_version >= '3.6.0'",
"version": "==5.0.0" "version": "==5.0.0"
}, },
"waitress": { "waitress": {
@ -1359,7 +1360,7 @@
"sha256:7500c9625927c8ec60f54377d590f67b30c8e70ef4b8894214ac6e4cad233d2a", "sha256:7500c9625927c8ec60f54377d590f67b30c8e70ef4b8894214ac6e4cad233d2a",
"sha256:780a4082c5fbc0fde6a2fcfe5e26e6efc1e8f425730863c04085769781f51eba" "sha256:780a4082c5fbc0fde6a2fcfe5e26e6efc1e8f425730863c04085769781f51eba"
], ],
"markers": "python_version >= '3.7'", "markers": "python_full_version >= '3.7.0'",
"version": "==2.1.2" "version": "==2.1.2"
}, },
"wcwidth": { "wcwidth": {
@ -1468,7 +1469,7 @@
"sha256:6b351bbb12dd58af57ffef05bc78425d08d1914e0fd68ee14143b7ade023c5bc", "sha256:6b351bbb12dd58af57ffef05bc78425d08d1914e0fd68ee14143b7ade023c5bc",
"sha256:837f2f0e0ca79481b92884962b914eba4e72b7a2daaf1f939c890ed0124b834b" "sha256:837f2f0e0ca79481b92884962b914eba4e72b7a2daaf1f939c890ed0124b834b"
], ],
"markers": "python_version >= '3.7'", "markers": "python_full_version >= '3.7.0'",
"version": "==3.0.1" "version": "==3.0.1"
}, },
"xlrd": { "xlrd": {
@ -1492,7 +1493,7 @@
"sha256:05b45f1ee8f807d0cc928485ca40a07cb491cf092ff587c0df9cb1fd154848d2", "sha256:05b45f1ee8f807d0cc928485ca40a07cb491cf092ff587c0df9cb1fd154848d2",
"sha256:47c40d7fe183a6f21403a199b3e4192cca5774656965b0a4988ad2f8feb5f009" "sha256:47c40d7fe183a6f21403a199b3e4192cca5774656965b0a4988ad2f8feb5f009"
], ],
"markers": "python_version >= '3.7'", "markers": "python_full_version >= '3.7.0'",
"version": "==3.8.1" "version": "==3.8.1"
} }
}, },
@ -1564,7 +1565,7 @@
"sha256:dd47c42927d89ab911e606518907cc2d3a1f38bbd026385970643f9c5b8ecfeb", "sha256:dd47c42927d89ab911e606518907cc2d3a1f38bbd026385970643f9c5b8ecfeb",
"sha256:ef103e05f519cdc783ae24ea4e2e0f508a9c99b2d4969652eed6a2e1ea5bd522" "sha256:ef103e05f519cdc783ae24ea4e2e0f508a9c99b2d4969652eed6a2e1ea5bd522"
], ],
"markers": "python_version >= '3.6'", "markers": "python_full_version >= '3.6.0'",
"version": "==21.3" "version": "==21.3"
}, },
"pbr": { "pbr": {

6
crc/models/api_models.py
View File

@ -212,15 +212,13 @@ class DocumentDirectory(object):
class WorkflowApi(object): class WorkflowApi(object):
def __init__(self, id, status, next_task, navigation, def __init__(self, id, status, next_task, navigation,
workflow_spec_id, total_tasks, completed_tasks, workflow_spec_id,
last_updated, is_review, title, study_id, state, is_admin_workflow=False): last_updated, is_review, title, study_id, state, is_admin_workflow=False):
self.id = id self.id = id
self.status = status self.status = status
self.next_task = next_task # The next task that requires user input. self.next_task = next_task # The next task that requires user input.
self.navigation = navigation self.navigation = navigation
self.workflow_spec_id = workflow_spec_id self.workflow_spec_id = workflow_spec_id
self.total_tasks = total_tasks
self.completed_tasks = completed_tasks
self.last_updated = last_updated self.last_updated = last_updated
self.title = title self.title = title
self.is_review = is_review self.is_review = is_review
@ -245,7 +243,7 @@ class WorkflowApiSchema(ma.Schema):
@marshmallow.post_load @marshmallow.post_load
def make_workflow(self, data, **kwargs): def make_workflow(self, data, **kwargs):
keys = ['id', 'status', 'next_task', 'navigation', keys = ['id', 'status', 'next_task', 'navigation',
'workflow_spec_id', "total_tasks", "completed_tasks", 'workflow_spec_id',
"last_updated", "is_review", "title", "study_id", "state", "is_admin_workflow"] "last_updated", "is_review", "title", "study_id", "state", "is_admin_workflow"]
filtered_fields = {key: data[key] for key in keys} filtered_fields = {key: data[key] for key in keys}
filtered_fields['next_task'] = TaskSchema().make_task(data['next_task']) filtered_fields['next_task'] = TaskSchema().make_task(data['next_task'])

2
crc/models/study.py
View File

@ -169,8 +169,6 @@ class WorkflowMetadata(object):
state=workflow.state or WorkflowState.optional.value, state=workflow.state or WorkflowState.optional.value,
state_message=workflow.state_message, state_message=workflow.state_message,
status=workflow.status, status=workflow.status,
total_tasks=workflow.total_tasks,
completed_tasks=workflow.completed_tasks,
is_review=spec.is_review, is_review=spec.is_review,
display_order=spec.display_order, display_order=spec.display_order,
workflow_spec_id=workflow.workflow_spec_id workflow_spec_id=workflow.workflow_spec_id

2
crc/models/workflow.py
View File

@ -114,8 +114,6 @@ class WorkflowModel(db.Model):
study_id = db.Column(db.Integer, db.ForeignKey('study.id')) study_id = db.Column(db.Integer, db.ForeignKey('study.id'))
study = db.relationship("StudyModel", backref='workflow', lazy='select') study = db.relationship("StudyModel", backref='workflow', lazy='select')
workflow_spec_id = db.Column(db.String) workflow_spec_id = db.Column(db.String)
total_tasks = db.Column(db.Integer, default=0)
completed_tasks = db.Column(db.Integer, default=0)
last_updated = db.Column(db.DateTime(timezone=True), server_default=func.now()) last_updated = db.Column(db.DateTime(timezone=True), server_default=func.now())
user_id = db.Column(db.String, default=None) user_id = db.Column(db.String, default=None)
state = db.Column(db.String, nullable=True) state = db.Column(db.String, nullable=True)

40
crc/services/workflow_processor.py
View File

@ -121,7 +121,7 @@ class WorkflowProcessor(object):
try: try:
parser = self.get_spec_parser(self.spec_files, spec_info) parser = self.get_spec_parser(self.spec_files, spec_info)
top_level = parser.get_spec(spec_info.primary_process_id) top_level = parser.get_spec(spec_info.primary_process_id)
subprocesses = parser.get_process_specs() subprocesses = parser.get_subprocess_specs(spec_info.primary_process_id)
self.bpmn_workflow = BpmnWorkflow(top_level, subprocesses, script_engine=self._script_engine) self.bpmn_workflow = BpmnWorkflow(top_level, subprocesses, script_engine=self._script_engine)
self.bpmn_workflow.data[WorkflowProcessor.STUDY_ID_KEY] = workflow_model.study_id self.bpmn_workflow.data[WorkflowProcessor.STUDY_ID_KEY] = workflow_model.study_id
self.bpmn_workflow.data[WorkflowProcessor.VALIDATION_PROCESS_KEY] = validate_only self.bpmn_workflow.data[WorkflowProcessor.VALIDATION_PROCESS_KEY] = validate_only
@ -152,31 +152,21 @@ class WorkflowProcessor(object):
json_size = B / MB json_size = B / MB
if json_size > 1: if json_size > 1:
wf_json = json.loads(workflow_model.bpmn_workflow_json) wf_json = json.loads(workflow_model.bpmn_workflow_json)
if 'spec' in wf_json and 'tasks' in wf_json: # message = 'Workflow ' + workflow_model.workflow_spec_id + ' JSON Size is over 1MB:{0:.2f} MB'.format(
task_tree = wf_json['tasks'] json_size)
test_spec = wf_json['spec'] for k,v in wf_json.items():
task_size = "{:.2f}".format(len(json.dumps(task_tree).encode('utf-8')) / MB) size = len(json.dumps(v).encode('utf-8')) / MB
spec_size = "{:.2f}".format(len(json.dumps(test_spec).encode('utf-8')) / MB) if size > 0.2:
message = 'Workflow ' + workflow_model.workflow_spec_id + ' JSON Size is over 1MB:{0:.2f} MB'.format( size_str = "{:.2f}".format(size)
json_size) message += f"\n {k} Size: {size_str}"
message += f"\n Task Size: {task_size}" sub_size = len(json.dumps(wf_json['subprocesses']).encode('utf-8')) / MB
message += f"\n Spec Size: {spec_size}" message += f"\n TOTAL Subprocesses: { len(wf_json['subprocesses']) }"
app.logger.warning(message) for sp in wf_json['subprocesses'].values():
sp_size = len(json.dumps(sp).encode('utf-8')) / MB
message += f"\n {list(sp['tasks'].values())[0]['workflow_name']} :: {sp_size}"
def check_sub_specs(test_spec, indent=0, show_all=False):
for my_spec_name in test_spec['task_specs']:
my_spec = test_spec['task_specs'][my_spec_name]
my_spec_size = len(json.dumps(my_spec).encode('utf-8')) / MB
if my_spec_size > 0.1 or show_all:
app.logger.warning(
(' ' * indent) + 'Sub-Spec ' + my_spec['name'] + ' :' + "{:.2f}".format(my_spec_size))
if 'spec' in my_spec:
my_show_all = False
if my_spec['name'] == 'Call_Emails_Process_Email':
my_show_all = True
check_sub_specs(my_spec['spec'], indent + 5)
check_sub_specs(test_spec, 5) app.logger.warning(message)
@staticmethod @staticmethod
def reset(workflow_model, clear_data=False): def reset(workflow_model, clear_data=False):
@ -261,7 +251,7 @@ class WorkflowProcessor(object):
parser = WorkflowProcessor.get_spec_parser(spec_files, spec_model) parser = WorkflowProcessor.get_spec_parser(spec_files, spec_model)
try: try:
top_level = parser.get_spec(spec_model.primary_process_id) top_level = parser.get_spec(spec_model.primary_process_id)
subprocesses = parser.get_process_specs() subprocesses = parser.get_subprocess_specs(spec_model.primary_process_id)
bpmn_workflow = BpmnWorkflow(top_level, subprocesses, script_engine=WorkflowProcessor._script_engine) bpmn_workflow = BpmnWorkflow(top_level, subprocesses, script_engine=WorkflowProcessor._script_engine)
bpmn_workflow.data[WorkflowProcessor.STUDY_ID_KEY] = study.id bpmn_workflow.data[WorkflowProcessor.STUDY_ID_KEY] = study.id
bpmn_workflow.data[WorkflowProcessor.VALIDATION_PROCESS_KEY] = False bpmn_workflow.data[WorkflowProcessor.VALIDATION_PROCESS_KEY] = False

63
crc/services/workflow_service.py
View File

@ -126,7 +126,7 @@ class WorkflowService(object):
@staticmethod @staticmethod
def get_erroring_workflows(): def get_erroring_workflows():
workflows = session.query(WorkflowModel).filter(WorkflowModel.status==WorkflowStatus.erroring).all() workflows = session.query(WorkflowModel).filter(WorkflowModel.status == WorkflowStatus.erroring).all()
return workflows return workflows
@staticmethod @staticmethod
@ -181,8 +181,6 @@ class WorkflowService(object):
count = 0 count = 0
while not processor.bpmn_workflow.is_completed(): while not processor.bpmn_workflow.is_completed():
processor.bpmn_workflow.get_deep_nav_list() # Assure no errors with navigation.
exit_task = processor.bpmn_workflow.do_engine_steps(exit_at=test_until) exit_task = processor.bpmn_workflow.do_engine_steps(exit_at=test_until)
if (exit_task != None): if (exit_task != None):
raise ApiError.from_task("validation_break", raise ApiError.from_task("validation_break",
@ -197,7 +195,8 @@ class WorkflowService(object):
f" current task data must have information mapping this role to " f" current task data must have information mapping this role to "
f" a unique user id.", task) f" a unique user id.", task)
if task.task_spec.lane is not None: if task.task_spec.lane is not None:
if isinstance(task.data[task.task_spec.lane], str) and not LdapService().user_exists(task.data[task.task_spec.lane]): if isinstance(task.data[task.task_spec.lane], str) and not LdapService().user_exists(
task.data[task.task_spec.lane]):
raise ApiError.from_task("missing_user", raise ApiError.from_task("missing_user",
f"The user '{task.data[task.task_spec.lane]}' " f"The user '{task.data[task.task_spec.lane]}' "
f"could not be found in LDAP. ", task) f"could not be found in LDAP. ", task)
@ -215,9 +214,9 @@ class WorkflowService(object):
if hasattr(task_api, 'form') and task_api.form is not None: if hasattr(task_api, 'form') and task_api.form is not None:
if task_api.form.key == '': if task_api.form.key == '':
raise ApiError(code='missing_form_key', raise ApiError(code='missing_form_key',
message='Forms must include a Form Key.', message='Forms must include a Form Key.',
task_id=task.id, task_id=task.id,
task_name=task.get_name()) task_name=task.get_name())
WorkflowService.populate_form_with_random_data(task, task_api, required_only) WorkflowService.populate_form_with_random_data(task, task_api, required_only)
if not WorkflowService.validate_form(task, task_api): if not WorkflowService.validate_form(task, task_api):
# In the process of completing the form, it is possible for fields to become required # In the process of completing the form, it is possible for fields to become required
@ -247,7 +246,8 @@ class WorkflowService(object):
raise raise
except Exception as e: except Exception as e:
# Catch generic exceptions so that the finally clause always executes # Catch generic exceptions so that the finally clause always executes
app.logger.error(f'Unexpected exception caught during validation. Original exception: {str(e)}', exc_info=True) app.logger.error(f'Unexpected exception caught during validation. Original exception: {str(e)}',
exc_info=True)
raise ApiError(code='unknown_exception', raise ApiError(code='unknown_exception',
message=f'We caught an unexpected exception during validation. Original exception is: {str(e)}') message=f'We caught an unexpected exception during validation. Original exception is: {str(e)}')
finally: finally:
@ -335,8 +335,9 @@ class WorkflowService(object):
try: try:
form_data[field.id] = WorkflowService.get_default_value(field, task, data) form_data[field.id] = WorkflowService.get_default_value(field, task, data)
except Exception as e: except Exception as e:
raise ApiError.from_task("bad default value", f'The default value "{field.default_value}" in field {field.id} ' raise ApiError.from_task("bad default value",
f'could not be understood or evaluated. ', f'The default value "{field.default_value}" in field {field.id} '
f'could not be understood or evaluated. ',
task=task) task=task)
# If we have a good default value, and we aren't dealing with a repeat, we can stop here. # If we have a good default value, and we aren't dealing with a repeat, we can stop here.
if form_data[field.id] is not None and not field.has_property(Task.FIELD_PROP_REPEAT): if form_data[field.id] is not None and not field.has_property(Task.FIELD_PROP_REPEAT):
@ -374,7 +375,8 @@ class WorkflowService(object):
f'for repeat and group expressions that is not also used for a field name.' f'for repeat and group expressions that is not also used for a field name.'
, task=task) , task=task)
if field.has_property(Task.FIELD_PROP_REPEAT_HIDE_EXPRESSION): if field.has_property(Task.FIELD_PROP_REPEAT_HIDE_EXPRESSION):
result = WorkflowService.evaluate_property(Task.FIELD_PROP_REPEAT_HIDE_EXPRESSION, field, task, form_data) result = WorkflowService.evaluate_property(Task.FIELD_PROP_REPEAT_HIDE_EXPRESSION, field, task,
form_data)
if not result: if not result:
hide_groups.append(group) hide_groups.append(group)
if group not in form_data and group not in hide_groups: if group not in form_data and group not in hide_groups:
@ -554,7 +556,7 @@ class WorkflowService(object):
return default return default
else: else:
raise ApiError.from_task("unknown_lookup_option", "The settings for this auto complete field " raise ApiError.from_task("unknown_lookup_option", "The settings for this auto complete field "
"are incorrect: %s " % field.id, task) "are incorrect: %s " % field.id, task)
elif field.type == 'boolean': elif field.type == 'boolean':
default = str(default).lower() default = str(default).lower()
if default == 'true' or default == 't': if default == 'true' or default == 't':
@ -655,6 +657,30 @@ class WorkflowService(object):
letters = string.ascii_lowercase letters = string.ascii_lowercase
return ''.join(random.choice(letters) for i in range(string_length)) return ''.join(random.choice(letters) for i in range(string_length))
@staticmethod
def get_navigation(processor):
"""Finds all the ready, completed, and future tasks and created nav_item objects for them."""
tasks = []
navigation = []
# Get ready, completed, and fuiture tasks
tasks.extend(processor.bpmn_workflow.get_tasks(TaskState.READY | TaskState.COMPLETED | TaskState.FUTURE))
# Filter this out to just the user tasks and the start task
user_tasks = list(filter(lambda task: isinstance(task.task_spec, UserTask)
or isinstance(task.task_spec, ManualTask)
or isinstance(task.task_spec, StartEvent), tasks))
for user_task in user_tasks:
if any(nav.name == user_task.task_spec.name and user_task.state == TaskState.FUTURE for nav in navigation):
continue # Don't re-add the same spec for future items
nav_item = NavItem.from_spec(spec=user_task.task_spec)
nav_item.state = user_task.state.name
nav_item.task_id = user_task.id
nav_item.indent = 0 # we should remove indent, this is not nested now.
navigation.append(nav_item)
WorkflowService.update_navigation(navigation, processor)
return navigation
@staticmethod @staticmethod
def processor_to_workflow_api(processor: WorkflowProcessor, next_task=None): def processor_to_workflow_api(processor: WorkflowProcessor, next_task=None):
"""Returns an API model representing the state of the current workflow, if requested, and """Returns an API model representing the state of the current workflow, if requested, and
@ -668,10 +694,8 @@ class WorkflowService(object):
id=processor.get_workflow_id(), id=processor.get_workflow_id(),
status=processor.get_status(), status=processor.get_status(),
next_task=None, next_task=None,
navigation=navigation, navigation=WorkflowService.get_navigation(processor),
workflow_spec_id=processor.workflow_spec_id, workflow_spec_id=processor.workflow_spec_id,
total_tasks=len(navigation),
completed_tasks=processor.workflow_model.completed_tasks,
last_updated=processor.workflow_model.last_updated, last_updated=processor.workflow_model.last_updated,
is_review=spec.is_review, is_review=spec.is_review,
title=spec.display_name, title=spec.display_name,
@ -711,7 +735,6 @@ class WorkflowService(object):
impersonator_is_admin = UserService.user_is_admin(allow_admin_impersonate=True) impersonator_is_admin = UserService.user_is_admin(allow_admin_impersonate=True)
if not in_list and not impersonator_is_admin: if not in_list and not impersonator_is_admin:
nav_item.state = WorkflowService.TASK_STATE_LOCKED nav_item.state = WorkflowService.TASK_STATE_LOCKED
print('StartEvent: ')
else: else:
# Strip off the first word in the description, to meet guidlines for BPMN. # Strip off the first word in the description, to meet guidlines for BPMN.
if nav_item.description: if nav_item.description:
@ -806,7 +829,7 @@ class WorkflowService(object):
for i, field in enumerate(task.form.fields): for i, field in enumerate(task.form.fields):
task.form.fields[i] = WorkflowService.process_options(spiff_task, field) task.form.fields[i] = WorkflowService.process_options(spiff_task, field)
# If there is a default value, set it. # If there is a default value, set it.
#if field.id not in task.data and WorkflowService.get_default_value(field, spiff_task) is not None: # if field.id not in task.data and WorkflowService.get_default_value(field, spiff_task) is not None:
# task.data[field.id] = WorkflowService.get_default_value(field, spiff_task) # task.data[field.id] = WorkflowService.get_default_value(field, spiff_task)
task.documentation = WorkflowService._process_documentation(spiff_task) task.documentation = WorkflowService._process_documentation(spiff_task)
@ -844,8 +867,9 @@ class WorkflowService(object):
title = spiff_task.workflow.script_engine.evaluate(spiff_task, title) title = spiff_task.workflow.script_engine.evaluate(spiff_task, title)
except Exception as e: except Exception as e:
# if the task is ready, we should raise an error, but if it is in the future or the past, we may not # if the task is ready, we should raise an error, but if it is in the future or the past, we may not
# have the information we need to properly set the title, so don't error out, and just use what is # have the information we need to properly set the title, so don't error out, and just use the base
# provided. # description for now.
title = spiff_task.task_spec.description
if spiff_task.state == TaskState.READY: if spiff_task.state == TaskState.READY:
raise ApiError.from_task(code="task_title_error", raise ApiError.from_task(code="task_title_error",
message="Could not set task title on task %s with '%s' property because %s" % message="Could not set task title on task %s with '%s' property because %s" %
@ -855,7 +879,6 @@ class WorkflowService(object):
title = title.partition(' ')[2] title = title.partition(' ')[2]
return title return title
@staticmethod @staticmethod
def _process_properties(spiff_task, props): def _process_properties(spiff_task, props):
"""Runs all the property values through the Jinja2 processor to inject data.""" """Runs all the property values through the Jinja2 processor to inject data."""

8
tests/base_test.py
View File

@ -357,14 +357,6 @@ class BaseTest(unittest.TestCase):
# Assure task events are updated on the model # Assure task events are updated on the model
workflow = WorkflowApiSchema().load(json_data) workflow = WorkflowApiSchema().load(json_data)
# The total number of tasks may change over time, as users move through gateways
# branches may be pruned. As we hit parallel Multi-Instance new tasks may be created...
self.assertIsNotNone(workflow.total_tasks)
# presumably, we also need to deal with sequential items here too . .
# You may loop back to a previous task, which would actually reduce the number of
# completed tasks. So this test doesn't seem correct.
# if not task_in.multi_instance_type == 'looping' and not update_all:
# self.assertEqual(prev_completed_task_count + 1, workflow.completed_tasks)
# Assure a record exists in the Task Events # Assure a record exists in the Task Events
task_events = session.query(TaskEventModel) \ task_events = session.query(TaskEventModel) \

2
tests/study/test_study_api.py
View File

@ -72,8 +72,6 @@ class TestStudyApi(BaseTest):
self.assertEqual("random_fact", workflow["display_name"]) self.assertEqual("random_fact", workflow["display_name"])
self.assertEqual("optional", workflow["state"]) self.assertEqual("optional", workflow["state"])
self.assertEqual("not_started", workflow["status"]) self.assertEqual("not_started", workflow["status"])
self.assertEqual(0, workflow["total_tasks"])
self.assertEqual(0, workflow["completed_tasks"])
def test_get_study_updates_workflow_state(self): def test_get_study_updates_workflow_state(self):
self.load_test_spec('test_master_workflow', master_spec=True) self.load_test_spec('test_master_workflow', master_spec=True)

8
tests/test_multi_instance_tasks_api.py
View File

@ -30,7 +30,7 @@ class TestMultiinstanceTasksApi(BaseTest):
# get the first form in the two form workflow. # get the first form in the two form workflow.
workflow_api = self.get_workflow_api(workflow) workflow_api = self.get_workflow_api(workflow)
navigation = self.get_workflow_api(workflow_api).navigation navigation = self.get_workflow_api(workflow_api).navigation
self.assertEqual(5, len(navigation)) # Start task, form_task, multi_task, end task self.assertEqual(2, len(navigation)) # Start task, multi-instance/user task
self.assertEqual("UserTask", workflow_api.next_task.type) self.assertEqual("UserTask", workflow_api.next_task.type)
self.assertEqual(MultiInstanceType.sequential.value, workflow_api.next_task.multi_instance_type) self.assertEqual(MultiInstanceType.sequential.value, workflow_api.next_task.multi_instance_type)
self.assertEqual(5, workflow_api.next_task.multi_instance_count) self.assertEqual(5, workflow_api.next_task.multi_instance_count)
@ -52,9 +52,9 @@ class TestMultiinstanceTasksApi(BaseTest):
workflow = self.create_workflow('multi_instance_parallel') workflow = self.create_workflow('multi_instance_parallel')
workflow_api = self.get_workflow_api(workflow) workflow_api = self.get_workflow_api(workflow)
self.assertEqual(9, len(workflow_api.navigation)) self.assertEqual(6, len(workflow_api.navigation)) # Start event + 5 investigators
ready_items = [nav for nav in workflow_api.navigation if nav.state == "READY"] ready_items = [nav for nav in workflow_api.navigation if nav.state == "READY"]
self.assertEqual(5, len(ready_items)) self.assertEqual(5, len(ready_items)) # Just the 5 investigators.
self.assertEqual("UserTask", workflow_api.next_task.type) self.assertEqual("UserTask", workflow_api.next_task.type)
self.assertEqual("MultiInstanceTask",workflow_api.next_task.name) self.assertEqual("MultiInstanceTask",workflow_api.next_task.name)
@ -90,7 +90,7 @@ class TestMultiinstanceTasksApi(BaseTest):
workflow = self.create_workflow('multi_instance_parallel') workflow = self.create_workflow('multi_instance_parallel')
workflow_api = self.get_workflow_api(workflow) workflow_api = self.get_workflow_api(workflow)
self.assertEqual(9, len(workflow_api.navigation)) self.assertEqual(6, len(workflow_api.navigation)) # Start + 5 multi-instance investigators
ready_items = [nav for nav in workflow_api.navigation if nav.state == "READY"] ready_items = [nav for nav in workflow_api.navigation if nav.state == "READY"]
self.assertEqual(5, len(ready_items)) self.assertEqual(5, len(ready_items))

38
tests/test_tasks_api.py
View File

@ -8,6 +8,7 @@ from crc.models.api_models import WorkflowApiSchema
from crc.models.file import FileModelSchema from crc.models.file import FileModelSchema
from crc.models.workflow import WorkflowModel, WorkflowState, WorkflowStatus from crc.models.workflow import WorkflowModel, WorkflowState, WorkflowStatus
from crc.models.task_event import TaskEventModel from crc.models.task_event import TaskEventModel
from crc.services.workflow_processor import WorkflowProcessor
class TestTasksApi(BaseTest): class TestTasksApi(BaseTest):
@ -60,7 +61,7 @@ class TestTasksApi(BaseTest):
# get the first form in the two form workflow. # get the first form in the two form workflow.
workflow_api = self.get_workflow_api(workflow) workflow_api = self.get_workflow_api(workflow)
self.assertEqual('two_forms', workflow_api.workflow_spec_id) self.assertEqual('two_forms', workflow_api.workflow_spec_id)
self.assertEqual(5, len(workflow_api.navigation)) self.assertEqual(3, len(workflow_api.navigation)) # start and 2 forms
self.assertIsNotNone(workflow_api.next_task.form) self.assertIsNotNone(workflow_api.next_task.form)
self.assertEqual("UserTask", workflow_api.next_task.type) self.assertEqual("UserTask", workflow_api.next_task.type)
self.assertEqual("StepOne", workflow_api.next_task.name) self.assertEqual("StepOne", workflow_api.next_task.name)
@ -99,43 +100,36 @@ class TestTasksApi(BaseTest):
def test_navigation_with_parallel_forms(self): def test_navigation_with_parallel_forms(self):
workflow = self.create_workflow('exclusive_gateway') workflow = self.create_workflow('exclusive_gateway')
processor = WorkflowProcessor(workflow)
# get the first form in the two form workflow. nav = processor.bpmn_workflow.get_deep_nav_list()
workflow_api = self.get_workflow_api(workflow)
self.assertIsNotNone(workflow_api.navigation)
nav = workflow_api.navigation
self.assertEqual(4, len(nav)) self.assertEqual(4, len(nav))
self.assertEqual("Do You Have Bananas", nav[1].description) self.assertEqual("Enter Do You Have Bananas", nav[1].description)
self.assertEqual("Bananas?", nav[2].description) self.assertEqual("Has Bananas?", nav[2].description)
self.assertEqual("MAYBE", nav[2].state)
self.assertEqual("yes", nav[2].children[0].description) self.assertEqual("yes", nav[2].children[0].description)
self.assertEqual("MAYBE", nav[2].children[0].state) self.assertEqual("MAYBE", nav[2].children[0].state)
self.assertEqual("of Bananas", nav[2].children[0].children[0].description) self.assertEqual("Number of Bananas", nav[2].children[0].children[0].description)
self.assertEqual("EndEvent", nav[2].children[0].children[1].spec_type) self.assertEqual("EndEvent", nav[2].children[0].children[1].spec_type)
self.assertEqual("no", nav[2].children[1].description) self.assertEqual("no", nav[2].children[1].description)
self.assertEqual("MAYBE", nav[2].children[1].state) self.assertEqual("MAYBE", nav[2].children[1].state)
self.assertEqual("no bananas", nav[2].children[1].children[0].description) self.assertEqual("Why no bananas", nav[2].children[1].children[0].description)
self.assertEqual("EndEvent", nav[2].children[1].children[1].spec_type) self.assertEqual("EndEvent", nav[2].children[1].children[1].spec_type)
def test_navigation_with_exclusive_gateway(self): def test_navigation_with_exclusive_gateway(self):
workflow = self.create_workflow('exclusive_gateway_2') workflow = self.create_workflow('exclusive_gateway_2')
processor = WorkflowProcessor(workflow)
# get the first form in the two form workflow. # get the first form in the two form workflow.
workflow_api = self.get_workflow_api(workflow) nav = processor.bpmn_workflow.get_deep_nav_list()
self.assertIsNotNone(workflow_api.navigation)
nav = workflow_api.navigation
self.assertEqual(7, len(nav)) self.assertEqual(7, len(nav))
self.assertEqual("Task 1", nav[1].description) self.assertEqual("Enter Task 1", nav[1].description)
self.assertEqual("Which Branch?", nav[2].description) self.assertEqual("Decide Which Branch?", nav[2].description)
self.assertEqual("a", nav[2].children[0].description) self.assertEqual("a", nav[2].children[0].description)
self.assertEqual("Task 2a", nav[2].children[0].children[0].description) self.assertEqual("Enter Task 2a", nav[2].children[0].children[0].description)
self.assertEqual("b", nav[2].children[1].description) self.assertEqual("b", nav[2].children[1].description)
self.assertEqual("Task 2b", nav[2].children[1].children[0].description) self.assertEqual("Enter Task 2b", nav[2].children[1].children[0].description)
self.assertEqual(None, nav[3].description) self.assertEqual(None, nav[3].description)
self.assertEqual("Task 3", nav[4].description) self.assertEqual("Enter Task 3", nav[4].description)
self.assertEqual("EndEvent", nav[5].spec_type) self.assertEqual("EndEvent", nav[5].spec_type)
def test_document_added_to_workflow_shows_up_in_file_list(self): def test_document_added_to_workflow_shows_up_in_file_list(self):
@ -356,7 +350,7 @@ class TestTasksApi(BaseTest):
navigation = workflow_api.navigation navigation = workflow_api.navigation
task = workflow_api.next_task task = workflow_api.next_task
self.assertEqual(5, len(navigation)) self.assertEqual(4, len(navigation)) # 2 start events + 2 user tasks
self.assertEqual("UserTask", task.type) self.assertEqual("UserTask", task.type)
self.assertEqual("Activity_A", task.name) self.assertEqual("Activity_A", task.name)
self.assertEqual("My Sub Process", task.process_name) self.assertEqual("My Sub Process", task.process_name)

22
tests/test_user_roles.py
View File

@ -64,7 +64,7 @@ class TestUserRoles(BaseTest):
workflow_api = self.get_workflow_api(workflow, user_uid=submitter.uid) workflow_api = self.get_workflow_api(workflow, user_uid=submitter.uid)
nav = workflow_api.navigation nav = workflow_api.navigation
self.assertEqual(4, len(nav)) self.assertEqual(3, len(nav))
self.assertEqual("supervisor", nav[2].lane) self.assertEqual("supervisor", nav[2].lane)
def test_get_outstanding_tasks_awaiting_current_user(self): def test_get_outstanding_tasks_awaiting_current_user(self):
@ -123,10 +123,9 @@ class TestUserRoles(BaseTest):
# Navigation as Submitter with ready task. # Navigation as Submitter with ready task.
workflow_api = self.get_workflow_api(workflow, user_uid=submitter.uid) workflow_api = self.get_workflow_api(workflow, user_uid=submitter.uid)
nav = workflow_api.navigation nav = workflow_api.navigation
self.assertEqual(4, len(nav)) self.assertEqual(3, len(nav))
self.assertEqual('READY', nav[1].state) # First item is ready, no progress yet. self.assertEqual('READY', nav[1].state) # First item is ready, no progress yet.
self.assertEqual('LOCKED', nav[2].state) # Second item is locked, it is the review and doesn't belong to this user. self.assertEqual('LOCKED', nav[2].state) # Second item is locked, it is the review and doesn't belong to this user.
self.assertEqual('MAYBE', nav[3].state) # Third item is a gateway, which contains things that are also locked.
self.assertEqual('READY', workflow_api.next_task.state) self.assertEqual('READY', workflow_api.next_task.state)
# Navigation as Submitter after handoff to supervisor # Navigation as Submitter after handoff to supervisor
@ -136,7 +135,6 @@ class TestUserRoles(BaseTest):
nav = workflow_api.navigation nav = workflow_api.navigation
self.assertEqual('COMPLETED', nav[1].state) # First item is ready, no progress yet. self.assertEqual('COMPLETED', nav[1].state) # First item is ready, no progress yet.
self.assertEqual('LOCKED', nav[2].state) # Second item is locked, it is the review and doesn't belong to this user. self.assertEqual('LOCKED', nav[2].state) # Second item is locked, it is the review and doesn't belong to this user.
self.assertEqual('MAYBE', nav[3].state) # third item is a gateway, and belongs to no one
# In the event the next task is locked, we should say something sensible here. # In the event the next task is locked, we should say something sensible here.
# It is possible to look at the role of the task, and say The next task "TASK TITLE" will # It is possible to look at the role of the task, and say The next task "TASK TITLE" will
# be handled by 'dhf8r', who is full-filling the role of supervisor. the Task Data # be handled by 'dhf8r', who is full-filling the role of supervisor. the Task Data
@ -150,7 +148,6 @@ class TestUserRoles(BaseTest):
nav = workflow_api.navigation nav = workflow_api.navigation
self.assertEqual('LOCKED', nav[1].state) # First item belongs to the submitter, and is locked. self.assertEqual('LOCKED', nav[1].state) # First item belongs to the submitter, and is locked.
self.assertEqual('READY', nav[2].state) # Second item is ready, as we are now the supervisor. self.assertEqual('READY', nav[2].state) # Second item is ready, as we are now the supervisor.
self.assertEqual('MAYBE', nav[3].state) # Feedback is locked.
self.assertEqual('READY', workflow_api.next_task.state) self.assertEqual('READY', workflow_api.next_task.state)
data = workflow_api.next_task.data data = workflow_api.next_task.data
@ -161,15 +158,6 @@ class TestUserRoles(BaseTest):
nav = workflow_api.navigation nav = workflow_api.navigation
self.assertEqual('LOCKED', nav[1].state) # First item belongs to the submitter, and is locked. self.assertEqual('LOCKED', nav[1].state) # First item belongs to the submitter, and is locked.
self.assertEqual('COMPLETED', nav[2].state) # Second item is locked, it is the review and doesn't belong to this user. self.assertEqual('COMPLETED', nav[2].state) # Second item is locked, it is the review and doesn't belong to this user.
self.assertEqual('READY', nav[3].state) # Gateway is ready, and should be unfolded
# order of these is unclear ...
approved = list(filter(lambda child: child.name == 'approved', nav[3].children))[0]
rejected = list(filter(lambda child: child.name == 'rejected', nav[3].children))[0]
self.assertEqual(None, approved.state) # sequence flow for approved is none - we aren't going this way.
self.assertEqual('READY', rejected.state) # sequence flow for denied is ready
self.assertEqual('LOCKED', rejected.children[0].state) # Feedback is locked, it belongs to submitter
self.assertEqual('LOCKED', rejected.children[0].state) # Approval is locked, it belongs to the submitter
self.assertEqual('LOCKED', workflow_api.next_task.state)
# Navigation as Submitter, coming back in to a rejected workflow to view the rejection message. # Navigation as Submitter, coming back in to a rejected workflow to view the rejection message.
workflow_api = self.get_workflow_api(workflow, user_uid=submitter.uid) workflow_api = self.get_workflow_api(workflow, user_uid=submitter.uid)
@ -178,12 +166,6 @@ class TestUserRoles(BaseTest):
self.assertEqual('COMPLETED', nav[1].state) # First item belongs to the submitter, and is locked. self.assertEqual('COMPLETED', nav[1].state) # First item belongs to the submitter, and is locked.
self.assertEqual('LOCKED', nav[2].state) # Second item is locked, it is the review and doesn't belong to this user. self.assertEqual('LOCKED', nav[2].state) # Second item is locked, it is the review and doesn't belong to this user.
self.assertEqual('READY', nav[3].state) self.assertEqual('READY', nav[3].state)
# order of these is unclear ...
approved = list(filter(lambda child: child.name == 'approved', nav[3].children))[0]
rejected = list(filter(lambda child: child.name == 'rejected', nav[3].children))[0]
self.assertEqual(None, approved.state) # sequence flow for approved is none - we aren't going this way.
self.assertEqual('READY', rejected.state) # sequence flow for denied is ready
self.assertEqual('READY', rejected.children[0].state) # Feedback is locked, it belongs to submitter
# Navigation as Submitter, re-completing the original request a second time, and sending it for review. # Navigation as Submitter, re-completing the original request a second time, and sending it for review.
workflow_api = self.complete_form(workflow, workflow_api.next_task, data, user_uid=submitter.uid) workflow_api = self.complete_form(workflow, workflow_api.next_task, data, user_uid=submitter.uid)

2
tests/workflow/test_workflow_processor_multi_instance.py
View File

@ -171,7 +171,7 @@ class TestWorkflowProcessorMultiInstance(BaseTest):
# Assure navigation picks up the label of the current element variable. # Assure navigation picks up the label of the current element variable.
nav = WorkflowService.processor_to_workflow_api(processor, task).navigation nav = WorkflowService.processor_to_workflow_api(processor, task).navigation
self.assertEqual("Primary Investigator", nav[2].description) self.assertEqual("Primary Investigator", nav[1].description)
task.update_data({"investigator": {"email": "dhf8r@virginia.edu"}}) task.update_data({"investigator": {"email": "dhf8r@virginia.edu"}})
processor.complete_task(task) processor.complete_task(task)