From 4068fbbc086d10ae868edbbf7af0dea00d66cca3 Mon Sep 17 00:00:00 2001 From: Dan Date: Wed, 6 Oct 2021 15:27:26 -0400 Subject: [PATCH] Migration to fix the names of the workflow specs. --- migrations/versions/ac1141d29d37_.py | 82 ++++++++++++++++++++++++++++ 1 file changed, 82 insertions(+) create mode 100644 migrations/versions/ac1141d29d37_.py diff --git a/migrations/versions/ac1141d29d37_.py b/migrations/versions/ac1141d29d37_.py new file mode 100644 index 00000000..465ed4f0 --- /dev/null +++ b/migrations/versions/ac1141d29d37_.py @@ -0,0 +1,82 @@ +"""empty message + +Revision ID: ac1141d29d37 +Revises: 8580676e5302 +Create Date: 2021-10-06 14:05:58.062277 + +""" +import re + +from alembic import op +import sqlalchemy as sa + +# revision identifiers, used by Alembic. +from crc.models.workflow import WorkflowSpecModel, WorkflowModel + +revision = 'ac1141d29d37' +down_revision = '8580676e5302' +branch_labels = None +depends_on = None + + +def upgrade(): + print("Doing the upgrade") + op.execute('ALTER TABLE workflow DROP CONSTRAINT workflow_workflow_spec_id_fkey') + op.execute('ALTER TABLE file DROP CONSTRAINT file_workflow_spec_id_fkey') + op.execute('ALTER TABLE workflow_library DROP CONSTRAINT workflow_library_workflow_spec_id_fkey') + op.execute('ALTER TABLE workflow_library DROP CONSTRAINT workflow_library_library_spec_id_fkey') + op.execute('ALTER TABLE task_event DROP CONSTRAINT task_event_workflow_spec_id_fkey') + # Use Alchemy's connection and transaction to noodle over the data. + connection = op.get_bind() + + # Select all existing names that need migrating. + results = connection.execute(sa.select([ + WorkflowSpecModel.id, + WorkflowSpecModel.display_name, + ])).fetchall() + # Iterate over all selected data tuples. + for id, display_name in results: + new_id = display_name.lower().\ + replace(",", "").\ + replace("'", "").\ + replace(" ", "_").\ + replace("-", "_").\ + replace(".", "_").\ + replace("/","_").\ + replace("\\", "_") + old_id = id + op.execute("Update workflow_spec set id='%s' where id='%s'" % (new_id, old_id)) + op.execute("Update workflow set workflow_spec_id='%s' where workflow_spec_id='%s'" % (new_id, old_id)) + op.execute("Update file set workflow_spec_id='%s' where workflow_spec_id='%s'" % (new_id, old_id)) + op.execute("Update workflow_library set workflow_spec_id='%s' where workflow_spec_id='%s'" % (new_id, old_id)) + op.execute("Update workflow_library set library_spec_id='%s' where library_spec_id='%s'" % (new_id, old_id)) + op.execute("Update task_event set workflow_spec_id='%s' where workflow_spec_id='%s'" % (new_id, old_id)) + op.create_foreign_key( + 'workflow_workflow_spec_id_fkey', + 'workflow', 'workflow_spec', + ['workflow_spec_id'], ['id'], + ) + op.create_foreign_key( + 'file_workflow_spec_id_fkey', + 'file', 'workflow_spec', + ['workflow_spec_id'], ['id'], + ) + op.create_foreign_key( + 'workflow_library_workflow_spec_id_fkey', + 'workflow_library', 'workflow_spec', + ['workflow_spec_id'], ['id'], + ) + op.create_foreign_key( + 'workflow_library_library_spec_id_fkey', + 'workflow_library', 'workflow_spec', + ['library_spec_id'], ['id'], + ) + op.create_foreign_key( + 'task_event_workflow_spec_id_fkey', + 'task_event', 'workflow_spec', + ['workflow_spec_id'], ['id'], + ) + + +def downgrade(): + pass