cr-connect-workflow/tests/study/test_study_details.py

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import json
from SpiffWorkflow.bpmn.PythonScriptEngine import Box
from tests.base_test import BaseTest
from unittest.mock import patch
from crc import app, session
from crc.api.common import ApiError
from crc.models.file import FileDataModel, FileModel
from crc.models.protocol_builder import ProtocolBuilderRequiredDocumentSchema, ProtocolBuilderStudySchema
from crc.models.study import StudyModel
from crc.scripts.study_info import StudyInfo
from crc.services.file_service import FileService
from crc.services.study_service import StudyService
from crc.services.workflow_processor import WorkflowProcessor
class TestStudyDetailsScript(BaseTest):
test_uid = "dhf8r"
test_study_id = 1
def setUp(self):
self.load_example_data()
self.create_reference_document()
self.study = session.query(StudyModel).first()
self.workflow_spec_model = self.load_test_spec("two_forms")
self.workflow_model = StudyService._create_workflow_model(self.study, self.workflow_spec_model)
self.processor = WorkflowProcessor(self.workflow_model)
self.task = self.processor.next_task()
@patch('crc.services.protocol_builder.requests.get')
def test_study_info_returns_a_box_object_for_all_validations(self, mock_get):
app.config['PB_ENABLED'] = True
mock_get.return_value.ok = True
for option in StudyInfo.type_options:
if option == 'info':
mock_get.return_value.text = self.protocol_builder_response('irb_info.json')
elif option == 'investigators':
mock_get.return_value.text = self.protocol_builder_response('investigators.json')
elif option == 'roles':
mock_get.return_value.text = self.protocol_builder_response('investigators.json')
elif option == 'details':
mock_get.return_value.text = self.protocol_builder_response('study_details.json')
elif option == 'documents':
mock_get.return_value.text = self.protocol_builder_response('required_docs.json')
elif option == 'sponsors':
mock_get.return_value.text = self.protocol_builder_response('sponsors.json')
data = StudyInfo().do_task_validate_only(self.task, self.study.id, self.workflow_model.id, option)
if isinstance(data, list):
for x in data:
self.assertIsInstance(x, Box, "this is not a list of boxes:" + option)
else:
self.assertIsInstance(data, Box, "this is not a box:" + option)
def test_study_info_returns_a_box_object(self):
docs = StudyInfo().do_task(self.task, self.study.id, self.workflow_model.id, "info")
self.assertTrue(isinstance(docs, Box))
@patch('crc.services.protocol_builder.ProtocolBuilderService.get_investigators') # mock_studies
def test_study_investigators_returns_box(self, mock_investigators):
investigators_response = self.protocol_builder_response('investigators.json')
mock_investigators.return_value = json.loads(investigators_response)
docs = StudyInfo().do_task(self.task, self.study.id, self.workflow_model.id, "investigators")
self.assertTrue(isinstance(docs, Box))
@patch('crc.services.protocol_builder.ProtocolBuilderService.get_investigators') # mock_studies
def test_study_roles_returns_box(self, mock_investigators):
investigators_response = self.protocol_builder_response('investigators.json')
mock_investigators.return_value = json.loads(investigators_response)
docs = StudyInfo().do_task(self.task, self.study.id, self.workflow_model.id, "roles")
self.assertTrue(isinstance(docs, Box))
@patch('crc.services.protocol_builder.ProtocolBuilderService.get_study_details') # mock_studies
def test_study_details_returns_box(self, mock_details):
details_response = self.protocol_builder_response('study_details.json')
mock_details.return_value = json.loads(details_response)
data = StudyInfo().do_task(self.task, self.study.id, self.workflow_model.id, "details")
self.assertTrue(isinstance(data, Box))
@patch('crc.services.protocol_builder.ProtocolBuilderService.get_sponsors') # mock_studies
def test_study_sponsors_returns_box(self, mock):
response = self.protocol_builder_response('sponsors.json')
mock.return_value = json.loads(response)
data = StudyInfo().do_task(self.task, self.study.id, self.workflow_model.id, "sponsors")
self.assertTrue(isinstance(data, list))
for x in data:
self.assertIsInstance(x, Box)