cr-connect-workflow/crc/services/workflow_service.py

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from SpiffWorkflow.bpmn.workflow import BpmnWorkflow
from pandas import ExcelFile
from crc.api.common import ApiError
from crc.models.api_models import Task
import jinja2
from jinja2 import Template
from crc.services.file_service import FileService
from crc.services.workflow_processor import WorkflowProcessor, CustomBpmnScriptEngine
from SpiffWorkflow import Task as SpiffTask, WorkflowException
class WorkflowService(object):
"""Provides tools for processing workflows and tasks. This
should at some point, be the only way to work with Workflows, and
the workflow Processor should be hidden behind this service.
This will help maintain a structure that avoids circular dependencies.
But for now, this contains tools for converting spiff-workflow models into our
own API models with additional information and capabilities."""
@classmethod
def test_spec(cls, spec_id):
"""Runs a spec through it's paces to see if it results in any errors. Not full proof, but a good
sanity check."""
spec = WorkflowProcessor.get_spec(spec_id)
bpmn_workflow = BpmnWorkflow(spec, script_engine=CustomBpmnScriptEngine())
bpmn_workflow.data[WorkflowProcessor.STUDY_ID_KEY] = 1
bpmn_workflow.data[WorkflowProcessor.WORKFLOW_ID_KEY] = spec_id
bpmn_workflow.data[WorkflowProcessor.VALIDATION_PROCESS_KEY] = True
while not bpmn_workflow.is_completed():
try:
bpmn_workflow.do_engine_steps()
tasks = bpmn_workflow.get_tasks(SpiffTask.READY)
for task in tasks:
task_api = WorkflowService.spiff_task_to_api_task(
task) # Assure we try to process the documenation, and raise those errors.
WorkflowProcessor.populate_form_with_random_data(task)
task.complete()
except WorkflowException as we:
raise ApiError.from_task_spec("workflow_execution_exception", str(we),
we.sender)
@staticmethod
def spiff_task_to_api_task(spiff_task):
documentation = spiff_task.task_spec.documentation if hasattr(spiff_task.task_spec, "documentation") else ""
task = Task(spiff_task.id,
spiff_task.task_spec.name,
spiff_task.task_spec.description,
spiff_task.task_spec.__class__.__name__,
spiff_task.get_state_name(),
None,
documentation,
spiff_task.data)
# Only process the form and documentation if this is something that is ready or completed.
if not (spiff_task._is_predicted()):
if hasattr(spiff_task.task_spec, "form"):
task.form = spiff_task.task_spec.form
for field in task.form.fields:
WorkflowService._process_options(spiff_task, field)
if documentation != "" and documentation is not None:
WorkflowService._process_documentation(task, documentation)
return task
@staticmethod
def _process_documentation(task, documentation):
"""Runs the given documentation string through the Jinja2 processor to inject data
create loops, etc..."""
try:
template = Template(documentation)
task.documentation = template.render(**task.data)
except jinja2.exceptions.TemplateError as ue:
raise ApiError(code="template_error", message="Error processing template for task %s: %s" %
(task.name, str(ue)), status_code=500)
# TODO: Catch additional errors and report back.
@staticmethod
def _process_options(spiff_task, field):
""" Checks to see if the options are provided in a separate lookup table associated with the
workflow, and populates these if possible. """
if field.has_property(Task.ENUM_OPTIONS_FILE_PROP):
if not field.has_property(Task.EMUM_OPTIONS_VALUE_COL_PROP) or \
not field.has_property(Task.EMUM_OPTIONS_LABEL_COL_PROP):
raise ApiError.from_task("invalid_emum",
"For emumerations based on an xls file, you must include 3 properties: %s, "
"%s, and %s, you supplied %s" % (Task.ENUM_OPTIONS_FILE_PROP,
Task.EMUM_OPTIONS_VALUE_COL_PROP,
Task.EMUM_OPTIONS_LABEL_COL_PROP),
task=spiff_task)
# Get the file data from the File Service
file_name = field.get_property(Task.ENUM_OPTIONS_FILE_PROP)
value_column = field.get_property(Task.EMUM_OPTIONS_VALUE_COL_PROP)
label_column = field.get_property(Task.EMUM_OPTIONS_LABEL_COL_PROP)
data_model = FileService.get_workflow_file_data(spiff_task.workflow, file_name)
xls = ExcelFile(data_model.data)
df = xls.parse(xls.sheet_names[0])
if value_column not in df:
raise ApiError("invalid_emum",
"The file %s does not contain a column named % s" % (file_name, value_column))
if label_column not in df:
raise ApiError("invalid_emum",
"The file %s does not contain a column named % s" % (file_name, label_column))
for index, row in df.iterrows():
field.options.append({"id": row[value_column],
"name": row[label_column]})