cr-connect-workflow/Pipfile

[[source]]
name = "pypi"
url = "https://pypi.org/simple"
verify_ssl = true

[dev-packages]
pytest = "*"
pbr = "*"

[packages]
connexion = {extras = ["swagger-ui"],version = "*"}
swagger-ui-bundle = "*"
flask = "*"
flask-bcrypt = "*"
flask-cors = "*"
flask-marshmallow = "*"
flask-migrate = "*"
flask-restful = "*"
httpretty = "*"
marshmallow = "*"
marshmallow-enum = "*"
marshmallow-sqlalchemy = "*"
openpyxl = "*"
pyjwt = "*"
requests = "*"
xlsxwriter = "*"
webtest = "*"
spiffworkflow = {editable = true,git = "https://github.com/sartography/SpiffWorkflow.git",ref = "deploy"}
alembic = "*"
coverage = "*"
sphinx = "*"
recommonmark = "*"
psycopg2-binary = "*"
docxtpl = "*"
python-dateutil = "*"
pandas = "*"
xlrd = "*"
ldap3 = "*"
gunicorn = "*"
werkzeug = "*"

[requires]
python_version = "3.7"
Adds basic Flask, Connexion, and SpiffWorkflow structure 2019-11-19 15:57:46 -05:00			`[[source]]`
Fixes broken pipenv files 2019-11-19 16:53:46 -05:00			`name = "pypi"`
			`url = "https://pypi.org/simple"`
Adds basic Flask, Connexion, and SpiffWorkflow structure 2019-11-19 15:57:46 -05:00			`verify_ssl = true`

			`[dev-packages]`
			`pytest = "*"`
Builds Docker image as WSGI + gunicorn 2020-05-24 12:37:11 -04:00			`pbr = "*"`
Adds basic Flask, Connexion, and SpiffWorkflow structure 2019-11-19 15:57:46 -05:00
			`[packages]`
Lots and lots of random stuff as I organize code and get things to make sense. 2019-12-18 14:02:17 -05:00			`connexion = {extras = ["swagger-ui"],version = "*"}`
Fixes broken pipenv files 2019-11-19 16:53:46 -05:00			`swagger-ui-bundle = "*"`
			`flask = "*"`
Adds basic Flask, Connexion, and SpiffWorkflow structure 2019-11-19 15:57:46 -05:00			`flask-bcrypt = "*"`
			`flask-cors = "*"`
			`flask-marshmallow = "*"`
			`flask-migrate = "*"`
			`flask-restful = "*"`
			`httpretty = "*"`
			`marshmallow = "*"`
			`marshmallow-enum = "*"`
Fixes broken pipenv files 2019-11-19 16:53:46 -05:00			`marshmallow-sqlalchemy = "*"`
Adds basic Flask, Connexion, and SpiffWorkflow structure 2019-11-19 15:57:46 -05:00			`openpyxl = "*"`
			`pyjwt = "*"`
			`requests = "*"`
			`xlsxwriter = "*"`
Setting up tests to work correctly when verifying endpoints. 2019-11-21 11:36:32 -05:00			`webtest = "*"`
Moving spiff dependency to a deploy branch 2020-05-29 11:36:03 -04:00			`spiffworkflow = {editable = true,git = "https://github.com/sartography/SpiffWorkflow.git",ref = "deploy"}`
Lots and lots of random stuff as I organize code and get things to make sense. 2019-12-18 14:02:17 -05:00			`alembic = "*"`
			`coverage = "*"`
ReadTheDocs initial setup and configuration. 2020-01-07 13:40:31 -05:00			`sphinx = "*"`
			`recommonmark = "*"`
Converting this over to using Postgres. See the new postgres directory for a docker container to spin this up. Tests and development databases are the same, will try and get this corrected at some point. 2020-02-04 14:25:17 -05:00			`psycopg2-binary = "*"`
Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level. 2020-02-10 16:19:23 -05:00			`docxtpl = "*"`
Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database 2020-02-26 18:06:51 -05:00			`python-dateutil = "*"`
Just merging stuff real quick. 2020-03-18 17:03:36 -04:00			`pandas = "*"`
Found a few errors in the sqlalchemy file definition that was causing failures, and had some consistency problems with the IRB Categories file name. The API was bailing out because we had restricted file types to bpmn,svg,or dmn in the connexion config file, I don't restrict this anymore we have plenty of checks elsewhere. Adding xlrd as a dependency - this didn't fail till a push to production. 2020-03-20 08:21:21 -04:00			`xlrd = "*"`
Ldap Service with Test and mocks. LDAP_URL can be set in an environment variable. 2020-04-20 15:16:33 -04:00			`ldap3 = "*"`
Refactors Dockerfile again. Installs gunicorn. Don't run gunicorn until the container starts up. 2020-05-24 20:53:25 -04:00			`gunicorn = "*"`
Fixes all the paths and routing errors 2020-05-24 23:09:12 -04:00			`werkzeug = "*"`
Adds basic Flask, Connexion, and SpiffWorkflow structure 2019-11-19 15:57:46 -05:00
			`[requires]`
Bumps Python version to 3.7 2020-05-24 13:43:12 -04:00			`python_version = "3.7"`