* Disable ZK in large_config
Speeds up the tests from ~6m to ~1m (debug mode). `large_config` is crate-private so I don't think we need to worry about real users forgetting ZK, and I don't think ZK seems important in these tests, though we should probably have ZK enabled for a couple tests.
A couple tests need ZK or they fail; I added a TODO to look later.
This led to a few other changes:
- Fixed a bug where `trim` could truncate the final poly to a non-power-of-two length. This was improbable when ZK is on due to randomization.
- Gave a few methods access to the whole `CircuitConfig` vs `FriConfig` -- sort of necessary for the above fix, and I don't think there's much downside.
- Remove `cap_height` from `FriConfig` -- didn't really need it any more after giving more methods access to `CircuitConfig`, and having a single copy of the param feels cleaner/safer to me.
* PR feedback
I sort of "shifted" the loop in `fri_verifier_query_round` so that `fri_combine_initial` is called before the loop, and all `compute_evaluation` calls are in the loop (rather than the final one being outside). This lines up with my mental model of FRI, and I think it's more natural as it results in a loop with no branches, no `i - 1`s, and less state stored between iterations. Also added some comments etc.
Should be functionally equivalent to the old version.
* Add a tree of scopes for proving times
To replace the old `timed!` macro, which had no hierarchy.
It's similar to `ContextTree`, which tracks gate counts of circuit operations.
This gives a more organized output, with indentation levels based on scope depth, parent durations listed before child durations, etc.
* PR feedback
No functional changes here. The biggest change was moving certain files into new directories like `plonk` and `iop` (for things like `Challenger` that could be used in STARKs or other IOPs). I also split a few files, renames, etc, but again nothing functional, so I don't think a careful review is necessary (just a sanity check).
