Mainly storing pending generators in a Vec rather than a HashMap. Requires an extra check to make sure we don't run one twice after adding it to the Vec twice.
No functional changes here. The biggest change was moving certain files into new directories like `plonk` and `iop` (for things like `Challenger` that could be used in STARKs or other IOPs). I also split a few files, renames, etc, but again nothing functional, so I don't think a careful review is necessary (just a sanity check).