I sort of "shifted" the loop in `fri_verifier_query_round` so that `fri_combine_initial` is called before the loop, and all `compute_evaluation` calls are in the loop (rather than the final one being outside). This lines up with my mental model of FRI, and I think it's more natural as it results in a loop with no branches, no `i - 1`s, and less state stored between iterations. Also added some comments etc.
Should be functionally equivalent to the old version.
* Add a tree of scopes for proving times
To replace the old `timed!` macro, which had no hierarchy.
It's similar to `ContextTree`, which tracks gate counts of circuit operations.
This gives a more organized output, with indentation levels based on scope depth, parent durations listed before child durations, etc.
* PR feedback
No functional changes here. The biggest change was moving certain files into new directories like `plonk` and `iop` (for things like `Challenger` that could be used in STARKs or other IOPs). I also split a few files, renames, etc, but again nothing functional, so I don't think a careful review is necessary (just a sanity check).
