- Made some methods public, if they seemed like they'd be useful crates that depend on plonky2, and seemed like good/stable APIs
- Deleted a few things I didn't think seemed very useful
- Left a few for now that I was on the fence about
* Start work on optimized transpose
* Optimized transpose: 12-14% improvement on benchmark
* Transpose: Avoid bounds checks and change order of loops dynamically
* Transpose: re-enable bounds checks
* Disable ZK in large_config
Speeds up the tests from ~6m to ~1m (debug mode). `large_config` is crate-private so I don't think we need to worry about real users forgetting ZK, and I don't think ZK seems important in these tests, though we should probably have ZK enabled for a couple tests.
A couple tests need ZK or they fail; I added a TODO to look later.
This led to a few other changes:
- Fixed a bug where `trim` could truncate the final poly to a non-power-of-two length. This was improbable when ZK is on due to randomization.
- Gave a few methods access to the whole `CircuitConfig` vs `FriConfig` -- sort of necessary for the above fix, and I don't think there's much downside.
- Remove `cap_height` from `FriConfig` -- didn't really need it any more after giving more methods access to `CircuitConfig`, and having a single copy of the param feels cleaner/safer to me.
* PR feedback
No functional changes here. The biggest change was moving certain files into new directories like `plonk` and `iop` (for things like `Challenger` that could be used in STARKs or other IOPs). I also split a few files, renames, etc, but again nothing functional, so I don't think a careful review is necessary (just a sanity check).
* Use built-in `reverse_bits`; remove duplicate `reverse_index_bits`.
* Reduce precomputation time/space complexity from quadratic to linear.
* Several working cache-friendly FFTs.
* Fix to allow FFT of constant polynomial.
* Simplify FFT strategy choice.
* Add PrimeField and CHARACTERISTIC properties to Fields.
* Add faster method for inverse of 2^m.
* Pre-compute some of the roots; tidy up loop iteration.
* Precomputation for both FFT variants.
* Refactor precomputation; add optional parameters; rename some things.
* Unrolled version with zero tail.
* Iterative version of Unrolled precomputation.
* Test zero tail algo.
* Restore default degree.
* Address comments from @dlubarov and @wborgeaud.
