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capture top-level folder structure into README (and use standard naming)

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Codex Research
===============
Contains research for the Codex peer-to-peer storage network. Top-level structure:
* analysis - simulations, notebooks, etc;
* design - design proposals for Codex mechanisms and subsystems (e.g. marketplace mechanics, storage formats/protocols);
* evaluations - critical evaluations of existing systems;
* papers - summaries and/or evaluations for relevant academic papers;
* meetings - agendas for upcoming meetings.

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Codex Research
===============
Contains research for the Codex peer-to-peer storage network.