diff --git a/scripts/analysis.py b/scripts/analysis.py
index e904d4c..34faf34 100644
--- a/scripts/analysis.py
+++ b/scripts/analysis.py
@@ -219,10 +219,9 @@ def views(ctx: typer.Context,
                 help="Set the output prefix for the plots")
         ):
 
-    print("here 1 ")
     log.basicConfig(level=log.INFO)
-    #nwsize2vfins = compute_view_times(path, oprefix)
-    #write_dict(nwsize2vfins, f'{oprefix}-viewtimes.dict')
+    nwsize2vfins = compute_view_times(path, oprefix)
+    write_dict(nwsize2vfins, f'{oprefix}-viewtimes.dict')
 
     print("reading ")
     nwsize2vfins = read_dict(f'{oprefix}-viewtimes.dict')
diff --git a/scripts/build_cases.py b/scripts/build_cases.py
index 4c28252..258e469 100644
--- a/scripts/build_cases.py
+++ b/scripts/build_cases.py
@@ -8,19 +8,19 @@ from build_config import build_config
 def build_case(overlay, committees, nodes, config_name, max_view=1, network='default'):
     build_config(overlay, committees, nodes, config_name, max_view, network)
     # rename the runs with same configs 
+    modified_name = config_name
     if os.path.exists(f"../configs/{config_name}.json"):
         tail = random.randint(1, 10000)
         modified_name = f"{config_name}_{tail}"
-        os.rename(f"{config_name}.json", f"{modified_name}.json")
-        with open(f"{modified_name}.json", "r+") as f:
-            data = json.load(f)
-            data["stream_settings"]["path"] = f"{modified_name}.json"
-            f.seek(0)
-            json.dump(data, f)
-            f.truncate()
-        print(f"config clash: renaming {config_name} to {modified_name}")
-        config_name = modified_name
-    shutil.move(f"{config_name}.json", "../configs/")
+        print(f"name clash: renaming {config_name}.json to {modified_name}.json")
+    with open(f"{config_name}.json", "r+") as f:
+        data = json.load(f)
+        data["stream_settings"]["path"] = f"output/{modified_name}.csv"
+        f.seek(0)
+        json.dump(data, f, indent=4)
+        f.truncate()
+    os.rename(f"{config_name}.json", f"{modified_name}.json")
+    shutil.move(f"{modified_name}.json", "../configs/")
 
 def build_cases(csv_path):
     with open(csv_path, 'r') as csv_file:
diff --git a/scripts/build_tests.py b/scripts/build_tests.py
index 16fd145..f8633d8 100644
--- a/scripts/build_tests.py
+++ b/scripts/build_tests.py
@@ -73,14 +73,12 @@ def main(ctx: typer.Context,
                     failure_threshold,
                     CARNOT_ADVERSARY_THRESHOLD_PER_COMMITTEE,
                     CARNOT_NETWORK_ADVERSARY_THRESHOLD)
-    tree_depth= int(math.log(num_comm, 2)) if num_comm > 1 else 1
+    tree_depth= math.ceil(math.log(num_comm, 2)) if num_comm > 1 else 1
     num_nodes_branch= tree_depth * comm_size
-    '''
     print(
         f"num_nodes={num_nodes}, "
         f"total_tree_nodes={num_comm}, comm_size={comm_size}, remainder={remainder}, computed={prob:f}(req={failure_threshold:f}), depth={tree_depth}"
         )
-    '''
     tree_spec = f"tree,{num_nodes},{comm_size},"
     branch_spec = f"branch,{num_nodes_branch},{tree_depth},"
 
diff --git a/scripts/run.sh b/scripts/run.sh
index 57e501b..d04f417 100644
--- a/scripts/run.sh
+++ b/scripts/run.sh
@@ -1,12 +1,20 @@
 
-#for i in "10 100 200 300 400 500 600 700 800 900 1000 2000 3000 4000 5000 6000 7000 8000 9000 10000"
+#for i in "10 100 200 300 400 500 600 700 800 900 1000 2000 3000 4000 5000 6000 7000 8000 9000 10000
+
 prefix="compare"
-for p in 0.8 0.5 #0.1 0.01 0.001 0.0001
+
+probabilities="0.8 0.01"
+network_sizes="10 50 100 250 500 750 1000"
+
+#probabilities="0.8 0.5 0.1 0.01 0.001 0.0001"
+#network_sizes="10 50 100 250 500 750 1000 2000 3000 4000 5000 6000 7000 8000 9000 10000 12000 1400"
+
+for p in $probabilities
 do 
   dir="compare_"$p"/"
   mkdir -p $dir 
   echo "overlay,nodes,committees_or_depth,description" >  $dir$prefix"_"$p".csv"
-  for i in 10 50 100 250 500 750 #1000 2000 3000 4000 5000 6000 7000 8000 9000 10000 12000 1400
+  for i in $network_sizes
   do
   python3 build_tests.py --num-nodes $i --failure-threshold $p >> $dir$prefix"_"$p".csv"
   echo "num-nodes = $i, failure-threshold = $p"
@@ -15,7 +23,7 @@ done
 
 
 
-for p in 0.8 0.5 #0.1 0.01 0.001 0.0001
+for p in $probabilities
 do
   dir="compare_"$p"/"
   cd $dir
@@ -32,16 +40,21 @@ done
 
 
 
-for p in 0.8 0.5 #0.1 0.01 0.001 0.0001
+for p in $probabilities
 do
    dir="compare_"$p"/"
    cd $dir
-   pwd
-   ls -l output/*.json |  awk '{print $9}' > json_files
-   sed -e s/\.json//g -i json_files
-   for i in `cat json_files`
-   do
-      mv $i.json $i.csv
-   done
+   # renaming moved to `build_cases.py`
+   if ls output/*.json 1> /dev/null 2>&1; then
+      echo "json extension in output dir; need to rename"
+      ls -l output/*.json |  awk '{print $9}' > json_files
+      sed -e s/\.json//g -i json_files
+      for i in `cat json_files`
+      do
+          mv $i.json $i.csv
+      done
+   fi
    rm -rf  scripts
+   cd ..
+   echo "renaming/cleanup ($p) done.."
 done