diff --git a/API-Documentation.md b/API-Documentation.md
index d992744..ab55d4b 100644
--- a/API-Documentation.md
+++ b/API-Documentation.md
@@ -19,9 +19,9 @@
 * contracts-manager
 * deployment
 * embarkjs
-* library-manager
+* [library-manager](#library-manager)
 * namesystem
-* pipeline
+* [pipeline](#embark-pipeline)
 * process-logs-api-manager
 * [proxy](#proxy)
 * storage
@@ -583,26 +583,85 @@ module type: stack component
 ##### requests
 
 name: `pipeline:generateAll`
-Generates files registered with the pipeline
+arguments:
+  * cb {function} - function called once all the files have been generated by the pipeline
+description: Generates all files registered in the pipeline
 
 name: `pipeline:register`
 arguments:
-  * Object
-    * `path` (array<string>) - directory to write the file 
-    * `file` <string> - filename
-    * `format` <string> - file format
-    * `content` <string> - file content
+  * params {object} - Params used for generating a file with the pipeline. Interface for params:
+  ```
+  {
+    path {string} - output directory,
+    file: {string} - output filename,
+    format {string} - output file format (extension),
+    content {string} - output file contents
+  }
+  ```
+  * doneCb {function} - function that is fired once the blockchain node has started
+description: Registers a file to be generated by the pipeline when `pipeline:generateAll` is called. If a path+file has already been registered before, it will override it.
 
-registers a file with the pipeline to be generated.
-if a path+file has already been registered before, it will override it.
+##### actions run
 
-##### actions
+* `pipeline:generateAll:before` - Runs registered actions before the pipeline files are generated. Registering an event for this action is useful for timing when to register a pipeline file.
 
-name: `pipeline:generateAll:before`
-description: actions to run before the pipeline generates all the files
+* `pipeline:generateAll:after` - Runs registered actions after the pipeline files are generated. Registering an event for this action is useful for timing automated front-end build tools, such as Embark's built-in webpack pipeline.
 
-name: `pipeline:generateAll:after`
-description: actiosn to run after the pipeline generates all the files
+#### Endpoints
+
+##### GET /embark-api/file
+- **endpoint**: `/embark-api/file`
+- **type**: `GET`
+- **description**: Retrieves a file for the given path. Ensures that the file exists in the dapp directory.
+- **params**: 
+  - `path {string}` - path of the file of the file to retrieve
+- **response**: `object` - Resulting retrieved file.
+  - `name {string}` - file name
+  - `content` {string} - file content
+  - `path` {string} - file path (equivalent to `path` parameter)
+
+##### POST /embark-api/folders
+- **endpoint**: `/embark-api/folders`
+- **type**: `POST`
+- **description**: Creates a directory for the given path. Ensures that the directory is in the dapp path.
+- **params**: 
+  - `path {string}` - path of the directory to create
+- **response**: `object` - Resulting retrieved file.
+  - `name {string}` - created directory name
+  - `path` {string} - created directory path (equivalent to `path` parameter)
+
+##### POST /embark-api/files
+- **endpoint**: `/embark-api/files`
+- **type**: `POST`
+- **description**: Creates a file in the given path. Ensures that the path is in the dapp path.
+- **params**: 
+  - `path {string}` - path of the file to create
+  - `content {string}` - content of the file to create
+- **response**: `object` - Resulting retrieved file.
+  - `name {string}` - created file name
+  - `path` {string} - created file path (equivalent to `path` parameter)
+  - `content` {string} - created file content (equivalent to `content` parameter)
+
+##### DELETE /embark-api/file
+- **endpoint**: `/embark-api/file`
+- **type**: `DELETE`
+- **description**: Deletes a file in the given path. Ensures that the path is in the dapp path.
+- **params**: 
+  - `path {string}` - path of the file to create
+- **response**: `void`
+
+##### GET /embark-api/files
+- **endpoint**: `/embark-api/files`
+- **type**: `GET`
+- **description**: Gets an array of all files and directories in the dapp. Directories contain a `children` property, showing all child files - and directories.
+- **params**: none
+- **response**: `Array<File>` - An array of files in the dapp.
+  - `isRoot {boolean}` - `true` if the file or directory exists in the root of the dapp.
+  - `name` {string} - Name of the file or directory.
+  - `dirname` {string} - path of the parent directory.
+  - `path` {string} - Path of the file or directory.
+  - `ishidden` {boolean} - indicates if the file is meant to be hidden in file trees. `true` if the name begins with "." or the name is  "node_modules"
+  - `children` {Array<File>} - An array of files or directories that exist in the current directory. This property only exists for directories.
 
 ### basic-pipeline