* Further whitespace fixes by autopep8
* Using pep8 v1.6.2 (not currently used by pyflakes)
* Update config for pep8 and flake8 in tox.ini
* A separate pep8 entry for running autopep8. The ignores prevent
blank lines being added after docstrings.
* .tox and E133 are ignored in flake8 by default.
The order of the js files matters when minifying.
* Use the '.order' files to put specified files top of the file list.
* Sub-directory files inserted in list before root directory files.
* Sort everything else alphabetically for consistant ordering.
Calum Lind